Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1088 | 5' | -54.7 | NC_000929.1 | + | 24046 | 1.13 | 0.000311 |
Target: 5'- uCCGGCACUGCCAGCAGGCUAAAACCCu -3' miRNA: 3'- -GGCCGUGACGGUCGUCCGAUUUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 8856 | 0.81 | 0.076909 |
Target: 5'- uCCGGCACUGCUGGCGGaGCUGAAcgauuuACUg -3' miRNA: 3'- -GGCCGUGACGGUCGUC-CGAUUU------UGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 11537 | 0.76 | 0.172141 |
Target: 5'- gUGGCGCUGCUgcucgcugaacucuGGCAGGggGAuACCCg -3' miRNA: 3'- gGCCGUGACGG--------------UCGUCCgaUUuUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 27204 | 0.76 | 0.173114 |
Target: 5'- aCCGGCACaGCCAGCGGGgccagcagcacauCUGcuACCg -3' miRNA: 3'- -GGCCGUGaCGGUCGUCC-------------GAUuuUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 25539 | 0.75 | 0.17855 |
Target: 5'- -aGGUAaUGCCAGC-GGCUGugGCCCg -3' miRNA: 3'- ggCCGUgACGGUCGuCCGAUuuUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 31117 | 0.73 | 0.241665 |
Target: 5'- aCGGCACccuguccgaacGCCAGCGGGCU---GCCg -3' miRNA: 3'- gGCCGUGa----------CGGUCGUCCGAuuuUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 28240 | 0.73 | 0.254968 |
Target: 5'- gUGGCugUGCUGGCAgcccGGCUGAAuACCa -3' miRNA: 3'- gGCCGugACGGUCGU----CCGAUUU-UGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 23426 | 0.72 | 0.314216 |
Target: 5'- gCUGGCgaaUGCCuGGCAGGCggauGAACCg -3' miRNA: 3'- -GGCCGug-ACGG-UCGUCCGau--UUUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 25169 | 0.71 | 0.336437 |
Target: 5'- uCUGGC-UUGCCaauaaagcccugagAGCAGGCUGggccguggcaAAACCCu -3' miRNA: 3'- -GGCCGuGACGG--------------UCGUCCGAU----------UUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 27100 | 0.71 | 0.347538 |
Target: 5'- aCCGGgcagaaGCUGCCAGCcAGGCacuGACUg -3' miRNA: 3'- -GGCCg-----UGACGGUCG-UCCGauuUUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 24736 | 0.71 | 0.347538 |
Target: 5'- aCCGuaACcgGUCAGCAGGUUGGcAUCCg -3' miRNA: 3'- -GGCcgUGa-CGGUCGUCCGAUUuUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 2556 | 0.71 | 0.356253 |
Target: 5'- gCUGGCGCauauacgggGCCAaauccGCAGGC-AAAACCUg -3' miRNA: 3'- -GGCCGUGa--------CGGU-----CGUCCGaUUUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 23791 | 0.7 | 0.392626 |
Target: 5'- gCCGaCAgaUUGCCAGCguGGGCUGcaucaaAGGCCCg -3' miRNA: 3'- -GGCcGU--GACGGUCG--UCCGAU------UUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 25583 | 0.7 | 0.392626 |
Target: 5'- aCCGGUAC-GCCGGguGGggGuAAugCCa -3' miRNA: 3'- -GGCCGUGaCGGUCguCCgaU-UUugGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 24096 | 0.7 | 0.399235 |
Target: 5'- gCUGGCAgUGCCggaaaaagcgggacAGCGGGagagacAAGGCCCa -3' miRNA: 3'- -GGCCGUgACGG--------------UCGUCCga----UUUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 18172 | 0.7 | 0.402089 |
Target: 5'- aCgGGCACUGaaaugaCCGGCAGGCaauAGCUg -3' miRNA: 3'- -GgCCGUGAC------GGUCGUCCGauuUUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 15600 | 0.69 | 0.421444 |
Target: 5'- aCGGUuaauACUGCgGGCAaGCUG--GCCCa -3' miRNA: 3'- gGCCG----UGACGgUCGUcCGAUuuUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 15876 | 0.69 | 0.432325 |
Target: 5'- aCCGGaagACUGgCAGCGuucgguugacccccuGCUGAAACCCg -3' miRNA: 3'- -GGCCg--UGACgGUCGUc--------------CGAUUUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 2449 | 0.69 | 0.450478 |
Target: 5'- aCUGGaCAagcguugUUGCCGGUaaAGGCUGGGGCCa -3' miRNA: 3'- -GGCC-GU-------GACGGUCG--UCCGAUUUUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 17502 | 0.69 | 0.451499 |
Target: 5'- -aGGCAUUugaaCGGCAGGC--AGACCCg -3' miRNA: 3'- ggCCGUGAcg--GUCGUCCGauUUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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