miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1088 5' -54.7 NC_000929.1 + 23791 0.7 0.392626
Target:  5'- gCCGaCAgaUUGCCAGCguGGGCUGcaucaaAGGCCCg -3'
miRNA:   3'- -GGCcGU--GACGGUCG--UCCGAU------UUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 23426 0.72 0.314216
Target:  5'- gCUGGCgaaUGCCuGGCAGGCggauGAACCg -3'
miRNA:   3'- -GGCCGug-ACGG-UCGUCCGau--UUUGGg -5'
1088 5' -54.7 NC_000929.1 + 21055 0.67 0.581585
Target:  5'- gCCGGUAagggguuccacCUGCC-GCAGGgUu--GCCCc -3'
miRNA:   3'- -GGCCGU-----------GACGGuCGUCCgAuuuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 20985 0.68 0.525811
Target:  5'- -gGGCAaccCUG-CGGCAGG-UGGAACCCc -3'
miRNA:   3'- ggCCGU---GACgGUCGUCCgAUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 19810 0.68 0.525811
Target:  5'- aCCGGCA--GCaCGGCGGGUgcuGGCaCCa -3'
miRNA:   3'- -GGCCGUgaCG-GUCGUCCGauuUUG-GG- -5'
1088 5' -54.7 NC_000929.1 + 19558 0.68 0.472174
Target:  5'- aUGGCACgGgCAGCGcGGUUAAuACCUc -3'
miRNA:   3'- gGCCGUGaCgGUCGU-CCGAUUuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 19495 0.66 0.627059
Target:  5'- uCCGGCugaACUGCC-GCAGaac--GGCCCa -3'
miRNA:   3'- -GGCCG---UGACGGuCGUCcgauuUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 18929 0.68 0.514884
Target:  5'- gCGGCACUGUCGGCAcaGCUugagaaAAAACagCCa -3'
miRNA:   3'- gGCCGUGACGGUCGUc-CGA------UUUUG--GG- -5'
1088 5' -54.7 NC_000929.1 + 18172 0.7 0.402089
Target:  5'- aCgGGCACUGaaaugaCCGGCAGGCaauAGCUg -3'
miRNA:   3'- -GgCCGUGAC------GGUCGUCCGauuUUGGg -5'
1088 5' -54.7 NC_000929.1 + 17726 0.67 0.559079
Target:  5'- aUGGCACcccGcCCGGCAGGCguu--CCUg -3'
miRNA:   3'- gGCCGUGa--C-GGUCGUCCGauuuuGGG- -5'
1088 5' -54.7 NC_000929.1 + 17502 0.69 0.451499
Target:  5'- -aGGCAUUugaaCGGCAGGC--AGACCCg -3'
miRNA:   3'- ggCCGUGAcg--GUCGUCCGauUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 16538 0.66 0.638465
Target:  5'- aCGGCaacguACUGCCAGUacGGGUacAAAUCg -3'
miRNA:   3'- gGCCG-----UGACGGUCG--UCCGauUUUGGg -5'
1088 5' -54.7 NC_000929.1 + 15876 0.69 0.432325
Target:  5'- aCCGGaagACUGgCAGCGuucgguugacccccuGCUGAAACCCg -3'
miRNA:   3'- -GGCCg--UGACgGUCGUc--------------CGAUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 15600 0.69 0.421444
Target:  5'- aCGGUuaauACUGCgGGCAaGCUG--GCCCa -3'
miRNA:   3'- gGCCG----UGACGgUCGUcCGAUuuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 14818 0.69 0.461775
Target:  5'- uCCGGCACgugaUGCCAGCgcacAGGagaaaaAAGACgCCg -3'
miRNA:   3'- -GGCCGUG----ACGGUCG----UCCga----UUUUG-GG- -5'
1088 5' -54.7 NC_000929.1 + 14100 0.66 0.591776
Target:  5'- aCCGGCGCUGCauuugaugccacCGGUAacggcgguuaucuGGCaGAGGCCg -3'
miRNA:   3'- -GGCCGUGACG------------GUCGU-------------CCGaUUUUGGg -5'
1088 5' -54.7 NC_000929.1 + 13178 0.66 0.591776
Target:  5'- uUCGGCuucGCUGCCgucaugacauugcGGCcuGCUucGGCCCa -3'
miRNA:   3'- -GGCCG---UGACGG-------------UCGucCGAuuUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 11911 0.66 0.639606
Target:  5'- uCCGGCgauauccggguGCUGucCCAGCGGGUgcagucauuuuCCCa -3'
miRNA:   3'- -GGCCG-----------UGAC--GGUCGUCCGauuuu------GGG- -5'
1088 5' -54.7 NC_000929.1 + 11537 0.76 0.172141
Target:  5'- gUGGCGCUGCUgcucgcugaacucuGGCAGGggGAuACCCg -3'
miRNA:   3'- gGCCGUGACGG--------------UCGUCCgaUUuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 11028 0.68 0.504051
Target:  5'- -gGGUugUGgCA-CAGGCUGGAcagcACCCg -3'
miRNA:   3'- ggCCGugACgGUcGUCCGAUUU----UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.