miRNA display CGI


Results 41 - 46 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1088 5' -54.7 NC_000929.1 + 8856 0.81 0.076909
Target:  5'- uCCGGCACUGCUGGCGGaGCUGAAcgauuuACUg -3'
miRNA:   3'- -GGCCGUGACGGUCGUC-CGAUUU------UGGg -5'
1088 5' -54.7 NC_000929.1 + 8737 0.66 0.627059
Target:  5'- aCCGGacggACUGaCCGGCAaug-GAAGCCCg -3'
miRNA:   3'- -GGCCg---UGAC-GGUCGUccgaUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 6969 0.68 0.493318
Target:  5'- cCCGcaGCACUGCUGGCGGG----GACCa -3'
miRNA:   3'- -GGC--CGUGACGGUCGUCCgauuUUGGg -5'
1088 5' -54.7 NC_000929.1 + 2556 0.71 0.356253
Target:  5'- gCUGGCGCauauacgggGCCAaauccGCAGGC-AAAACCUg -3'
miRNA:   3'- -GGCCGUGa--------CGGU-----CGUCCGaUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 2449 0.69 0.450478
Target:  5'- aCUGGaCAagcguugUUGCCGGUaaAGGCUGGGGCCa -3'
miRNA:   3'- -GGCC-GU-------GACGGUCG--UCCGAUUUUGGg -5'
1088 5' -54.7 NC_000929.1 + 1950 0.66 0.615657
Target:  5'- aCUGGCAgcCcGCgAGCAuGGCUGGAGuauuCCCu -3'
miRNA:   3'- -GGCCGU--GaCGgUCGU-CCGAUUUU----GGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.