Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1088 | 5' | -54.7 | NC_000929.1 | + | 8856 | 0.81 | 0.076909 |
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Target: 5'- uCCGGCACUGCUGGCGGaGCUGAAcgauuuACUg -3' miRNA: 3'- -GGCCGUGACGGUCGUC-CGAUUU------UGGg -5' |
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| 1088 | 5' | -54.7 | NC_000929.1 | + | 8737 | 0.66 | 0.627059 |
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Target: 5'- aCCGGacggACUGaCCGGCAaug-GAAGCCCg -3' miRNA: 3'- -GGCCg---UGAC-GGUCGUccgaUUUUGGG- -5' |
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| 1088 | 5' | -54.7 | NC_000929.1 | + | 6969 | 0.68 | 0.493318 |
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Target: 5'- cCCGcaGCACUGCUGGCGGG----GACCa -3' miRNA: 3'- -GGC--CGUGACGGUCGUCCgauuUUGGg -5' |
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| 1088 | 5' | -54.7 | NC_000929.1 | + | 2556 | 0.71 | 0.356253 |
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Target: 5'- gCUGGCGCauauacgggGCCAaauccGCAGGC-AAAACCUg -3' miRNA: 3'- -GGCCGUGa--------CGGU-----CGUCCGaUUUUGGG- -5' |
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| 1088 | 5' | -54.7 | NC_000929.1 | + | 2449 | 0.69 | 0.450478 |
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Target: 5'- aCUGGaCAagcguugUUGCCGGUaaAGGCUGGGGCCa -3' miRNA: 3'- -GGCC-GU-------GACGGUCG--UCCGAUUUUGGg -5' |
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| 1088 | 5' | -54.7 | NC_000929.1 | + | 1950 | 0.66 | 0.615657 |
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Target: 5'- aCUGGCAgcCcGCgAGCAuGGCUGGAGuauuCCCu -3' miRNA: 3'- -GGCCGU--GaCGgUCGU-CCGAUUUU----GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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