miRNA display CGI


Results 41 - 46 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1088 5' -54.7 NC_000929.1 + 30119 0.66 0.625918
Target:  5'- gCCGGUACacGCUGGCAGcguGCUGAuggugugguuuacAGCCUg -3'
miRNA:   3'- -GGCCGUGa-CGGUCGUC---CGAUU-------------UUGGG- -5'
1088 5' -54.7 NC_000929.1 + 30907 0.66 0.627059
Target:  5'- aCGGCcuuucugcaauuACUGCCGucaGGGCUGccuggaauaaAAGCCCc -3'
miRNA:   3'- gGCCG------------UGACGGUcg-UCCGAU----------UUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 8737 0.66 0.627059
Target:  5'- aCCGGacggACUGaCCGGCAaug-GAAGCCCg -3'
miRNA:   3'- -GGCCg---UGAC-GGUCGUccgaUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 19495 0.66 0.627059
Target:  5'- uCCGGCugaACUGCC-GCAGaac--GGCCCa -3'
miRNA:   3'- -GGCCG---UGACGGuCGUCcgauuUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 16538 0.66 0.638465
Target:  5'- aCGGCaacguACUGCCAGUacGGGUacAAAUCg -3'
miRNA:   3'- gGCCG-----UGACGGUCG--UCCGauUUUGGg -5'
1088 5' -54.7 NC_000929.1 + 11911 0.66 0.639606
Target:  5'- uCCGGCgauauccggguGCUGucCCAGCGGGUgcagucauuuuCCCa -3'
miRNA:   3'- -GGCCG-----------UGAC--GGUCGUCCGauuuu------GGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.