miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11175 3' -53.7 NC_002816.1 + 60924 0.71 0.684826
Target:  5'- gGCGA-GUGUCG-CAACCCACaaaCCUGCg -3'
miRNA:   3'- -UGUUaCGUAGUgGUUGGGUGg--GGACG- -5'
11175 3' -53.7 NC_002816.1 + 68049 0.69 0.794435
Target:  5'- ----cGCAUCACCAccaacaaACCCACCCa--- -3'
miRNA:   3'- uguuaCGUAGUGGU-------UGGGUGGGgacg -5'
11175 3' -53.7 NC_002816.1 + 70391 0.67 0.907215
Target:  5'- cGCGggGCAaaaUCGCCGACUCGCgCCCc-- -3'
miRNA:   3'- -UGUuaCGU---AGUGGUUGGGUG-GGGacg -5'
11175 3' -53.7 NC_002816.1 + 77310 0.67 0.900052
Target:  5'- ----aGCGUcCGCCAcauccacACCCACUCCcGCa -3'
miRNA:   3'- uguuaCGUA-GUGGU-------UGGGUGGGGaCG- -5'
11175 3' -53.7 NC_002816.1 + 84455 0.67 0.879729
Target:  5'- cGguGUGCgAUCGCCccaacgucGAUCUACCCCUGa -3'
miRNA:   3'- -UguUACG-UAGUGG--------UUGGGUGGGGACg -5'
11175 3' -53.7 NC_002816.1 + 85319 0.66 0.919451
Target:  5'- uGCAGUGCGaCGCCAucuccUCCACCUCg-- -3'
miRNA:   3'- -UGUUACGUaGUGGUu----GGGUGGGGacg -5'
11175 3' -53.7 NC_002816.1 + 96709 0.66 0.935877
Target:  5'- aGCAcuUGCucAUCACCGugucaauacGCUCAUCUCUGCu -3'
miRNA:   3'- -UGUu-ACG--UAGUGGU---------UGGGUGGGGACG- -5'
11175 3' -53.7 NC_002816.1 + 99597 0.68 0.875271
Target:  5'- aACAGUGCAcUCGCCAACguuuuuguguagucgUCGCCCuUUGUc -3'
miRNA:   3'- -UGUUACGU-AGUGGUUG---------------GGUGGG-GACG- -5'
11175 3' -53.7 NC_002816.1 + 99796 0.67 0.889094
Target:  5'- ---uUGCAuagcgccccacacguUCACCAACCC-CCCCauuuuuuUGCu -3'
miRNA:   3'- uguuACGU---------------AGUGGUUGGGuGGGG-------ACG- -5'
11175 3' -53.7 NC_002816.1 + 100634 0.67 0.886969
Target:  5'- gGCA--GCAUCGCCcACCUACCCg--- -3'
miRNA:   3'- -UGUuaCGUAGUGGuUGGGUGGGgacg -5'
11175 3' -53.7 NC_002816.1 + 106871 0.67 0.893966
Target:  5'- ----aGCAcCACCAACUCGCCaCUGUc -3'
miRNA:   3'- uguuaCGUaGUGGUUGGGUGGgGACG- -5'
11175 3' -53.7 NC_002816.1 + 109861 0.66 0.919451
Target:  5'- aACAGUGCAUa------CCACCCCUGg -3'
miRNA:   3'- -UGUUACGUAgugguugGGUGGGGACg -5'
11175 3' -53.7 NC_002816.1 + 109898 0.73 0.60003
Target:  5'- uCAGUGUuuUCACCAcGCCCAgCgCCUGCu -3'
miRNA:   3'- uGUUACGu-AGUGGU-UGGGUgG-GGACG- -5'
11175 3' -53.7 NC_002816.1 + 109983 0.67 0.907215
Target:  5'- cACGGU-CGaCACCAACaCAUCCCUGUg -3'
miRNA:   3'- -UGUUAcGUaGUGGUUGgGUGGGGACG- -5'
11175 3' -53.7 NC_002816.1 + 119706 0.67 0.893966
Target:  5'- aAUAAUGUccCGCC-GCCUACCCCaccGCa -3'
miRNA:   3'- -UGUUACGuaGUGGuUGGGUGGGGa--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.