miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11175 3' -53.7 NC_002816.1 + 99796 0.67 0.889094
Target:  5'- ---uUGCAuagcgccccacacguUCACCAACCC-CCCCauuuuuuUGCu -3'
miRNA:   3'- uguuACGU---------------AGUGGUUGGGuGGGG-------ACG- -5'
11175 3' -53.7 NC_002816.1 + 84455 0.67 0.879729
Target:  5'- cGguGUGCgAUCGCCccaacgucGAUCUACCCCUGa -3'
miRNA:   3'- -UguUACG-UAGUGG--------UUGGGUGGGGACg -5'
11175 3' -53.7 NC_002816.1 + 99597 0.68 0.875271
Target:  5'- aACAGUGCAcUCGCCAACguuuuuguguagucgUCGCCCuUUGUc -3'
miRNA:   3'- -UGUUACGU-AGUGGUUG---------------GGUGGG-GACG- -5'
11175 3' -53.7 NC_002816.1 + 34913 0.69 0.822754
Target:  5'- ----cGCGcCACCAACCCAuCCaCCUGa -3'
miRNA:   3'- uguuaCGUaGUGGUUGGGU-GG-GGACg -5'
11175 3' -53.7 NC_002816.1 + 5281 0.7 0.77631
Target:  5'- ----gGCAUCACC--UCCACCCC-GCu -3'
miRNA:   3'- uguuaCGUAGUGGuuGGGUGGGGaCG- -5'
11175 3' -53.7 NC_002816.1 + 59407 0.74 0.517787
Target:  5'- aGCAAUGCGUCGCCcugaaaaacaugauuGCCCACUCUacuuuUGCc -3'
miRNA:   3'- -UGUUACGUAGUGGu--------------UGGGUGGGG-----ACG- -5'
11175 3' -53.7 NC_002816.1 + 106871 0.67 0.893966
Target:  5'- ----aGCAcCACCAACUCGCCaCUGUc -3'
miRNA:   3'- uguuaCGUaGUGGUUGGGUGGgGACG- -5'
11175 3' -53.7 NC_002816.1 + 119706 0.67 0.893966
Target:  5'- aAUAAUGUccCGCC-GCCUACCCCaccGCa -3'
miRNA:   3'- -UGUUACGuaGUGGuUGGGUGGGGa--CG- -5'
11175 3' -53.7 NC_002816.1 + 39944 0.67 0.900716
Target:  5'- gGCAAcaccuCAUCGCUAugcugucuACCCGCCaCCUGUa -3'
miRNA:   3'- -UGUUac---GUAGUGGU--------UGGGUGG-GGACG- -5'
11175 3' -53.7 NC_002816.1 + 12635 0.67 0.900716
Target:  5'- cACAAUcGCcauuuguucgAUCGCgAGCCCGCCUCcGCc -3'
miRNA:   3'- -UGUUA-CG----------UAGUGgUUGGGUGGGGaCG- -5'
11175 3' -53.7 NC_002816.1 + 109983 0.67 0.907215
Target:  5'- cACGGU-CGaCACCAACaCAUCCCUGUg -3'
miRNA:   3'- -UGUUAcGUaGUGGUUGgGUGGGGACG- -5'
11175 3' -53.7 NC_002816.1 + 6956 0.67 0.907215
Target:  5'- gGCGAUGCugaCACCGACaaguaCACCUauguacagCUGCu -3'
miRNA:   3'- -UGUUACGua-GUGGUUGg----GUGGG--------GACG- -5'
11175 3' -53.7 NC_002816.1 + 109861 0.66 0.919451
Target:  5'- aACAGUGCAUa------CCACCCCUGg -3'
miRNA:   3'- -UGUUACGUAgugguugGGUGGGGACg -5'
11175 3' -53.7 NC_002816.1 + 8670 0.66 0.940837
Target:  5'- ----cGCcgaCACCAcCCCGCCCUcuUGCa -3'
miRNA:   3'- uguuaCGua-GUGGUuGGGUGGGG--ACG- -5'
11175 3' -53.7 NC_002816.1 + 30559 1.12 0.002062
Target:  5'- uACAAUGCAUCACCAACCCACCCCUGCa -3'
miRNA:   3'- -UGUUACGUAGUGGUUGGGUGGGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.