miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11176 5' -50.9 NC_002816.1 + 102330 0.67 0.975889
Target:  5'- cGUGugAUugGuuggUGaGCgACGCGCa -3'
miRNA:   3'- cCACugUGugCuuuaAC-CGgUGCGCG- -5'
11176 5' -50.9 NC_002816.1 + 29508 0.73 0.799856
Target:  5'- --cGAUugGaugUGGAcgUGGCCACGCGUa -3'
miRNA:   3'- ccaCUGugU---GCUUuaACCGGUGCGCG- -5'
11176 5' -50.9 NC_002816.1 + 37788 1.15 0.003467
Target:  5'- uGGUGACACACGAAAUUGGCCACGCGCu -3'
miRNA:   3'- -CCACUGUGUGCUUUAACCGGUGCGCG- -5'
11176 5' -50.9 NC_002816.1 + 109949 0.66 0.990868
Target:  5'- -aUGACGC-UGAAugUGGCCGCGUu- -3'
miRNA:   3'- ccACUGUGuGCUUuaACCGGUGCGcg -5'
11176 5' -50.9 NC_002816.1 + 3860 0.66 0.990868
Target:  5'- cGGUGGCACACccucgcGGCgAUGUGg -3'
miRNA:   3'- -CCACUGUGUGcuuuaaCCGgUGCGCg -5'
11176 5' -50.9 NC_002816.1 + 79113 0.66 0.989559
Target:  5'- aGGUG-CGCGuCGAuccguuGUUGGCCACcaccuUGCa -3'
miRNA:   3'- -CCACuGUGU-GCUu-----UAACCGGUGc----GCG- -5'
11176 5' -50.9 NC_002816.1 + 57322 0.66 0.988705
Target:  5'- uGGUGAUACGCGuguacggagacaguAggUGGaCCAC-CGCc -3'
miRNA:   3'- -CCACUGUGUGCu-------------UuaACC-GGUGcGCG- -5'
11176 5' -50.9 NC_002816.1 + 121669 0.66 0.986503
Target:  5'- aGGuUGGCGCACGAAuggaagaaAUUGGagaGgGUGCa -3'
miRNA:   3'- -CC-ACUGUGUGCUU--------UAACCgg-UgCGCG- -5'
11176 5' -50.9 NC_002816.1 + 27661 0.67 0.982804
Target:  5'- uGGUGAUAauaGAAGUggUGGCCAgG-GCa -3'
miRNA:   3'- -CCACUGUgugCUUUA--ACCGGUgCgCG- -5'
11176 5' -50.9 NC_002816.1 + 48011 0.73 0.809094
Target:  5'- uGGUGguGCACACGAuggaggacGAUugUGGCCGgGgGCg -3'
miRNA:   3'- -CCAC--UGUGUGCU--------UUA--ACCGGUgCgCG- -5'
11176 5' -50.9 NC_002816.1 + 102905 0.7 0.916564
Target:  5'- uGGUGGCACAaau-GUUGaGUCACGUGg -3'
miRNA:   3'- -CCACUGUGUgcuuUAAC-CGGUGCGCg -5'
11176 5' -50.9 NC_002816.1 + 12104 0.7 0.922435
Target:  5'- uGGUGuACAUagACGAAucUGGCUuuGCGCc -3'
miRNA:   3'- -CCAC-UGUG--UGCUUuaACCGGugCGCG- -5'
11176 5' -50.9 NC_002816.1 + 17306 0.67 0.975889
Target:  5'- cGGUaucauACAUAgGGGAUUGGUgGCGCuGCa -3'
miRNA:   3'- -CCAc----UGUGUgCUUUAACCGgUGCG-CG- -5'
11176 5' -50.9 NC_002816.1 + 74478 0.72 0.827041
Target:  5'- uGGUGAgAUACGAGAguaacaaaaUGGUgUACGCGCu -3'
miRNA:   3'- -CCACUgUGUGCUUUa--------ACCG-GUGCGCG- -5'
11176 5' -50.9 NC_002816.1 + 4905 0.68 0.970267
Target:  5'- uGGUGACGa--GGAAgaGGagGCGCGCg -3'
miRNA:   3'- -CCACUGUgugCUUUaaCCggUGCGCG- -5'
11176 5' -50.9 NC_002816.1 + 72205 0.68 0.956328
Target:  5'- cGGUGACAU-CGGGAcacUUGGCaaacUGCGCc -3'
miRNA:   3'- -CCACUGUGuGCUUU---AACCGgu--GCGCG- -5'
11176 5' -50.9 NC_002816.1 + 86454 0.72 0.827041
Target:  5'- aGGUGGCugGCGGccaGAUUGaGUC-UGCGCu -3'
miRNA:   3'- -CCACUGugUGCU---UUAAC-CGGuGCGCG- -5'
11176 5' -50.9 NC_002816.1 + 30510 0.74 0.731147
Target:  5'- cGUGACACACGGAacGUUGaCgGCGuCGCa -3'
miRNA:   3'- cCACUGUGUGCUU--UAACcGgUGC-GCG- -5'
11176 5' -50.9 NC_002816.1 + 67498 0.68 0.963764
Target:  5'- aGGcgGACACAaaguAGUUGGCCACcuuuucCGCa -3'
miRNA:   3'- -CCa-CUGUGUgcu-UUAACCGGUGc-----GCG- -5'
11176 5' -50.9 NC_002816.1 + 119250 0.68 0.960165
Target:  5'- uGGgggGACACAUGAcguGAUUGGCgGgCG-GCg -3'
miRNA:   3'- -CCa--CUGUGUGCU---UUAACCGgU-GCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.