miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11177 3' -49.3 NC_002816.1 + 107825 0.66 0.995904
Target:  5'- aCAAUCuugcCGCGCUCCCgCCAaugauuccUCAG-CGCc -3'
miRNA:   3'- -GUUAGu---GUGUGAGGG-GGU--------AGUUuGUG- -5'
11177 3' -49.3 NC_002816.1 + 45943 0.66 0.995904
Target:  5'- gAAUCGCccgccaACUCaCCCuUCAAACACa -3'
miRNA:   3'- gUUAGUGug----UGAGgGGGuAGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 102197 0.66 0.995109
Target:  5'- cCAAUCACACguuucgcuauuguACUCCUCCAU---GCAg -3'
miRNA:   3'- -GUUAGUGUG-------------UGAGGGGGUAguuUGUg -5'
11177 3' -49.3 NC_002816.1 + 112071 0.66 0.99437
Target:  5'- uCAAUCAUcucuugGCGCaUCuCCUCAUCcAACACg -3'
miRNA:   3'- -GUUAGUG------UGUG-AG-GGGGUAGuUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 91715 0.66 0.99437
Target:  5'- gCAGUCcCACAuCUCCaCCCAuccgcUCAAACu- -3'
miRNA:   3'- -GUUAGuGUGU-GAGG-GGGU-----AGUUUGug -5'
11177 3' -49.3 NC_002816.1 + 80113 0.66 0.99437
Target:  5'- -uGUCACACuACUCa-CCAuauuuUCAAACGCg -3'
miRNA:   3'- guUAGUGUG-UGAGggGGU-----AGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 10662 0.66 0.992402
Target:  5'- ---aCACGCGuCUCgCCCCAaaGAACAUg -3'
miRNA:   3'- guuaGUGUGU-GAG-GGGGUagUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 84126 0.67 0.991107
Target:  5'- ---aCACACACcgagugCCCUCAaacaccucaccguUCAGACACu -3'
miRNA:   3'- guuaGUGUGUGa-----GGGGGU-------------AGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 14500 0.67 0.989924
Target:  5'- --cUCGCACAaaaCCCCCGUCuGGC-Cg -3'
miRNA:   3'- guuAGUGUGUga-GGGGGUAGuUUGuG- -5'
11177 3' -49.3 NC_002816.1 + 83178 0.67 0.989924
Target:  5'- aAAUCuGCGCGCUCCUCCAcCAc-CACc -3'
miRNA:   3'- gUUAG-UGUGUGAGGGGGUaGUuuGUG- -5'
11177 3' -49.3 NC_002816.1 + 36857 0.67 0.988468
Target:  5'- gCAAUCACACGCaaccCUCCCAccCAAuuCACa -3'
miRNA:   3'- -GUUAGUGUGUGa---GGGGGUa-GUUu-GUG- -5'
11177 3' -49.3 NC_002816.1 + 117083 0.67 0.988468
Target:  5'- uCAAUCAC-CucaUCCCCCAcCAcguACACa -3'
miRNA:   3'- -GUUAGUGuGug-AGGGGGUaGUu--UGUG- -5'
11177 3' -49.3 NC_002816.1 + 100519 0.67 0.986853
Target:  5'- -uAUCACauccucaaaACACcCCUCCAaaUCAAACACa -3'
miRNA:   3'- guUAGUG---------UGUGaGGGGGU--AGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 31576 0.67 0.98507
Target:  5'- ----gGCACACUCaaCCCCGUgaUAGGCACc -3'
miRNA:   3'- guuagUGUGUGAG--GGGGUA--GUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 105225 0.68 0.983109
Target:  5'- ---aCACGCACUCCCUCGcC--ACACc -3'
miRNA:   3'- guuaGUGUGUGAGGGGGUaGuuUGUG- -5'
11177 3' -49.3 NC_002816.1 + 109454 0.68 0.983109
Target:  5'- --uUCACACACUCCaCuCCAUaCAAccuguuguACACc -3'
miRNA:   3'- guuAGUGUGUGAGG-G-GGUA-GUU--------UGUG- -5'
11177 3' -49.3 NC_002816.1 + 23336 0.68 0.980959
Target:  5'- cCAAUCACcCGCUacaCCCAUUAAucaACGCa -3'
miRNA:   3'- -GUUAGUGuGUGAgg-GGGUAGUU---UGUG- -5'
11177 3' -49.3 NC_002816.1 + 82953 0.68 0.980959
Target:  5'- uGAUCuACAaacuCUCCCCCuUCGcACACa -3'
miRNA:   3'- gUUAG-UGUgu--GAGGGGGuAGUuUGUG- -5'
11177 3' -49.3 NC_002816.1 + 49636 0.68 0.980959
Target:  5'- -uAUCAuCAU-CUCCUCCAUCAAAcCGCg -3'
miRNA:   3'- guUAGU-GUGuGAGGGGGUAGUUU-GUG- -5'
11177 3' -49.3 NC_002816.1 + 93031 0.68 0.980959
Target:  5'- ---cUACAacCugUCCCCCGUCGAaaugaACACc -3'
miRNA:   3'- guuaGUGU--GugAGGGGGUAGUU-----UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.