miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11177 3' -49.3 NC_002816.1 + 10662 0.66 0.992402
Target:  5'- ---aCACGCGuCUCgCCCCAaaGAACAUg -3'
miRNA:   3'- guuaGUGUGU-GAG-GGGGUagUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 82953 0.68 0.980959
Target:  5'- uGAUCuACAaacuCUCCCCCuUCGcACACa -3'
miRNA:   3'- gUUAG-UGUgu--GAGGGGGuAGUuUGUG- -5'
11177 3' -49.3 NC_002816.1 + 23336 0.68 0.980959
Target:  5'- cCAAUCACcCGCUacaCCCAUUAAucaACGCa -3'
miRNA:   3'- -GUUAGUGuGUGAgg-GGGUAGUU---UGUG- -5'
11177 3' -49.3 NC_002816.1 + 109454 0.68 0.983109
Target:  5'- --uUCACACACUCCaCuCCAUaCAAccuguuguACACc -3'
miRNA:   3'- guuAGUGUGUGAGG-G-GGUA-GUU--------UGUG- -5'
11177 3' -49.3 NC_002816.1 + 105225 0.68 0.983109
Target:  5'- ---aCACGCACUCCCUCGcC--ACACc -3'
miRNA:   3'- guuaGUGUGUGAGGGGGUaGuuUGUG- -5'
11177 3' -49.3 NC_002816.1 + 31576 0.67 0.98507
Target:  5'- ----gGCACACUCaaCCCCGUgaUAGGCACc -3'
miRNA:   3'- guuagUGUGUGAG--GGGGUA--GUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 117083 0.67 0.988468
Target:  5'- uCAAUCAC-CucaUCCCCCAcCAcguACACa -3'
miRNA:   3'- -GUUAGUGuGug-AGGGGGUaGUu--UGUG- -5'
11177 3' -49.3 NC_002816.1 + 83178 0.67 0.989924
Target:  5'- aAAUCuGCGCGCUCCUCCAcCAc-CACc -3'
miRNA:   3'- gUUAG-UGUGUGAGGGGGUaGUuuGUG- -5'
11177 3' -49.3 NC_002816.1 + 84126 0.67 0.991107
Target:  5'- ---aCACACACcgagugCCCUCAaacaccucaccguUCAGACACu -3'
miRNA:   3'- guuaGUGUGUGa-----GGGGGU-------------AGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 49636 0.68 0.980959
Target:  5'- -uAUCAuCAU-CUCCUCCAUCAAAcCGCg -3'
miRNA:   3'- guUAGU-GUGuGAGGGGGUAGUUU-GUG- -5'
11177 3' -49.3 NC_002816.1 + 102480 0.68 0.973281
Target:  5'- uUAAUCAcCACAC-CCUCCAaUAAACAUg -3'
miRNA:   3'- -GUUAGU-GUGUGaGGGGGUaGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 93087 0.69 0.970283
Target:  5'- ---cCACGCGCUCCUCCAcCGGAUc- -3'
miRNA:   3'- guuaGUGUGUGAGGGGGUaGUUUGug -5'
11177 3' -49.3 NC_002816.1 + 37885 0.74 0.811605
Target:  5'- --cUCACAUugUCCCCCAccucgCAAaaccGCACa -3'
miRNA:   3'- guuAGUGUGugAGGGGGUa----GUU----UGUG- -5'
11177 3' -49.3 NC_002816.1 + 6225 0.73 0.864123
Target:  5'- ---gCACAUACUCUCCCuUCGccAGCACa -3'
miRNA:   3'- guuaGUGUGUGAGGGGGuAGU--UUGUG- -5'
11177 3' -49.3 NC_002816.1 + 43539 0.72 0.894462
Target:  5'- cCAGUCACACAa-CCaCCCAUUucuGCGCg -3'
miRNA:   3'- -GUUAGUGUGUgaGG-GGGUAGuu-UGUG- -5'
11177 3' -49.3 NC_002816.1 + 113955 0.7 0.932046
Target:  5'- aCAAUaCACACugUCCUCCAcCAccACACu -3'
miRNA:   3'- -GUUA-GUGUGugAGGGGGUaGUu-UGUG- -5'
11177 3' -49.3 NC_002816.1 + 78231 0.7 0.945753
Target:  5'- --cUCAU-CACUCCCCCAUCGuagauucuugugcgAACAUc -3'
miRNA:   3'- guuAGUGuGUGAGGGGGUAGU--------------UUGUG- -5'
11177 3' -49.3 NC_002816.1 + 7582 0.69 0.959859
Target:  5'- aAAUgCACACugUCUCCC--CGAGCACc -3'
miRNA:   3'- gUUA-GUGUGugAGGGGGuaGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 37838 0.69 0.970283
Target:  5'- -uGUCGCcguGCUCCCCUcucgCAAACACa -3'
miRNA:   3'- guUAGUGug-UGAGGGGGua--GUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 60877 0.69 0.970283
Target:  5'- cUAAUCACGCGCgcaCCUCCAaCAA-CACc -3'
miRNA:   3'- -GUUAGUGUGUGa--GGGGGUaGUUuGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.