miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11177 3' -49.3 NC_002816.1 + 37838 0.69 0.970283
Target:  5'- -uGUCGCcguGCUCCCCUcucgCAAACACa -3'
miRNA:   3'- guUAGUGug-UGAGGGGGua--GUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 60877 0.69 0.970283
Target:  5'- cUAAUCACGCGCgcaCCUCCAaCAA-CACc -3'
miRNA:   3'- -GUUAGUGUGUGa--GGGGGUaGUUuGUG- -5'
11177 3' -49.3 NC_002816.1 + 93087 0.69 0.970283
Target:  5'- ---cCACGCGCUCCUCCAcCGGAUc- -3'
miRNA:   3'- guuaGUGUGUGAGGGGGUaGUUUGug -5'
11177 3' -49.3 NC_002816.1 + 102480 0.68 0.973281
Target:  5'- uUAAUCAcCACAC-CCUCCAaUAAACAUg -3'
miRNA:   3'- -GUUAGU-GUGUGaGGGGGUaGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 107729 0.68 0.980959
Target:  5'- -cGUCGCGCAUUCgCCaCAcgaUCAAACAUc -3'
miRNA:   3'- guUAGUGUGUGAGgGG-GU---AGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 88014 0.68 0.974417
Target:  5'- -cGUCACAaaguugcacacuuuaUACUCCCCCuuuUCGuACACc -3'
miRNA:   3'- guUAGUGU---------------GUGAGGGGGu--AGUuUGUG- -5'
11177 3' -49.3 NC_002816.1 + 8203 0.72 0.894462
Target:  5'- uGAUgGCACGCU-CCUCGUCcGACACg -3'
miRNA:   3'- gUUAgUGUGUGAgGGGGUAGuUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 26390 0.73 0.864123
Target:  5'- --uUUGCACACUCCCCCcacAUCAcacuguggcaacGGCACc -3'
miRNA:   3'- guuAGUGUGUGAGGGGG---UAGU------------UUGUG- -5'
11177 3' -49.3 NC_002816.1 + 93031 0.68 0.980959
Target:  5'- ---cUACAacCugUCCCCCGUCGAaaugaACACc -3'
miRNA:   3'- guuaGUGU--GugAGGGGGUAGUU-----UGUG- -5'
11177 3' -49.3 NC_002816.1 + 100519 0.67 0.986853
Target:  5'- -uAUCACauccucaaaACACcCCUCCAaaUCAAACACa -3'
miRNA:   3'- guUAGUG---------UGUGaGGGGGU--AGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 36857 0.67 0.988468
Target:  5'- gCAAUCACACGCaaccCUCCCAccCAAuuCACa -3'
miRNA:   3'- -GUUAGUGUGUGa---GGGGGUa-GUUu-GUG- -5'
11177 3' -49.3 NC_002816.1 + 14500 0.67 0.989924
Target:  5'- --cUCGCACAaaaCCCCCGUCuGGC-Cg -3'
miRNA:   3'- guuAGUGUGUga-GGGGGUAGuUUGuG- -5'
11177 3' -49.3 NC_002816.1 + 112071 0.66 0.99437
Target:  5'- uCAAUCAUcucuugGCGCaUCuCCUCAUCcAACACg -3'
miRNA:   3'- -GUUAGUG------UGUG-AG-GGGGUAGuUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 107825 0.66 0.995904
Target:  5'- aCAAUCuugcCGCGCUCCCgCCAaugauuccUCAG-CGCc -3'
miRNA:   3'- -GUUAGu---GUGUGAGGG-GGU--------AGUUuGUG- -5'
11177 3' -49.3 NC_002816.1 + 45943 0.66 0.995904
Target:  5'- gAAUCGCccgccaACUCaCCCuUCAAACACa -3'
miRNA:   3'- gUUAGUGug----UGAGgGGGuAGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 40212 1.12 0.006325
Target:  5'- aCAAUCACACACUCCCCCAUCAAACACg -3'
miRNA:   3'- -GUUAGUGUGUGAGGGGGUAGUUUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.