miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11177 3' -49.3 NC_002816.1 + 84126 0.67 0.991107
Target:  5'- ---aCACACACcgagugCCCUCAaacaccucaccguUCAGACACu -3'
miRNA:   3'- guuaGUGUGUGa-----GGGGGU-------------AGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 84339 0.75 0.772738
Target:  5'- ---gCACACACUgcaCCCCGUCAAaaACACc -3'
miRNA:   3'- guuaGUGUGUGAg--GGGGUAGUU--UGUG- -5'
11177 3' -49.3 NC_002816.1 + 88014 0.68 0.974417
Target:  5'- -cGUCACAaaguugcacacuuuaUACUCCCCCuuuUCGuACACc -3'
miRNA:   3'- guUAGUGU---------------GUGAGGGGGu--AGUuUGUG- -5'
11177 3' -49.3 NC_002816.1 + 91715 0.66 0.99437
Target:  5'- gCAGUCcCACAuCUCCaCCCAuccgcUCAAACu- -3'
miRNA:   3'- -GUUAGuGUGU-GAGG-GGGU-----AGUUUGug -5'
11177 3' -49.3 NC_002816.1 + 93031 0.68 0.980959
Target:  5'- ---cUACAacCugUCCCCCGUCGAaaugaACACc -3'
miRNA:   3'- guuaGUGU--GugAGGGGGUAGUU-----UGUG- -5'
11177 3' -49.3 NC_002816.1 + 93087 0.69 0.970283
Target:  5'- ---cCACGCGCUCCUCCAcCGGAUc- -3'
miRNA:   3'- guuaGUGUGUGAGGGGGUaGUUUGug -5'
11177 3' -49.3 NC_002816.1 + 100519 0.67 0.986853
Target:  5'- -uAUCACauccucaaaACACcCCUCCAaaUCAAACACa -3'
miRNA:   3'- guUAGUG---------UGUGaGGGGGU--AGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 102197 0.66 0.995109
Target:  5'- cCAAUCACACguuucgcuauuguACUCCUCCAU---GCAg -3'
miRNA:   3'- -GUUAGUGUG-------------UGAGGGGGUAguuUGUg -5'
11177 3' -49.3 NC_002816.1 + 102480 0.68 0.973281
Target:  5'- uUAAUCAcCACAC-CCUCCAaUAAACAUg -3'
miRNA:   3'- -GUUAGU-GUGUGaGGGGGUaGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 105225 0.68 0.983109
Target:  5'- ---aCACGCACUCCCUCGcC--ACACc -3'
miRNA:   3'- guuaGUGUGUGAGGGGGUaGuuUGUG- -5'
11177 3' -49.3 NC_002816.1 + 107729 0.68 0.980959
Target:  5'- -cGUCGCGCAUUCgCCaCAcgaUCAAACAUc -3'
miRNA:   3'- guUAGUGUGUGAGgGG-GU---AGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 107825 0.66 0.995904
Target:  5'- aCAAUCuugcCGCGCUCCCgCCAaugauuccUCAG-CGCc -3'
miRNA:   3'- -GUUAGu---GUGUGAGGG-GGU--------AGUUuGUG- -5'
11177 3' -49.3 NC_002816.1 + 109454 0.68 0.983109
Target:  5'- --uUCACACACUCCaCuCCAUaCAAccuguuguACACc -3'
miRNA:   3'- guuAGUGUGUGAGG-G-GGUA-GUU--------UGUG- -5'
11177 3' -49.3 NC_002816.1 + 112071 0.66 0.99437
Target:  5'- uCAAUCAUcucuugGCGCaUCuCCUCAUCcAACACg -3'
miRNA:   3'- -GUUAGUG------UGUG-AG-GGGGUAGuUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 113955 0.7 0.932046
Target:  5'- aCAAUaCACACugUCCUCCAcCAccACACu -3'
miRNA:   3'- -GUUA-GUGUGugAGGGGGUaGUu-UGUG- -5'
11177 3' -49.3 NC_002816.1 + 117083 0.67 0.988468
Target:  5'- uCAAUCAC-CucaUCCCCCAcCAcguACACa -3'
miRNA:   3'- -GUUAGUGuGug-AGGGGGUaGUu--UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.