miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11177 3' -49.3 NC_002816.1 + 45943 0.66 0.995904
Target:  5'- gAAUCGCccgccaACUCaCCCuUCAAACACa -3'
miRNA:   3'- gUUAGUGug----UGAGgGGGuAGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 36857 0.67 0.988468
Target:  5'- gCAAUCACACGCaaccCUCCCAccCAAuuCACa -3'
miRNA:   3'- -GUUAGUGUGUGa---GGGGGUa-GUUu-GUG- -5'
11177 3' -49.3 NC_002816.1 + 100519 0.67 0.986853
Target:  5'- -uAUCACauccucaaaACACcCCUCCAaaUCAAACACa -3'
miRNA:   3'- guUAGUG---------UGUGaGGGGGU--AGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 26390 0.73 0.864123
Target:  5'- --uUUGCACACUCCCCCcacAUCAcacuguggcaacGGCACc -3'
miRNA:   3'- guuAGUGUGUGAGGGGG---UAGU------------UUGUG- -5'
11177 3' -49.3 NC_002816.1 + 93031 0.68 0.980959
Target:  5'- ---cUACAacCugUCCCCCGUCGAaaugaACACc -3'
miRNA:   3'- guuaGUGU--GugAGGGGGUAGUU-----UGUG- -5'
11177 3' -49.3 NC_002816.1 + 14500 0.67 0.989924
Target:  5'- --cUCGCACAaaaCCCCCGUCuGGC-Cg -3'
miRNA:   3'- guuAGUGUGUga-GGGGGUAGuUUGuG- -5'
11177 3' -49.3 NC_002816.1 + 107729 0.68 0.980959
Target:  5'- -cGUCGCGCAUUCgCCaCAcgaUCAAACAUc -3'
miRNA:   3'- guUAGUGUGUGAGgGG-GU---AGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 88014 0.68 0.974417
Target:  5'- -cGUCACAaaguugcacacuuuaUACUCCCCCuuuUCGuACACc -3'
miRNA:   3'- guUAGUGU---------------GUGAGGGGGu--AGUuUGUG- -5'
11177 3' -49.3 NC_002816.1 + 8203 0.72 0.894462
Target:  5'- uGAUgGCACGCU-CCUCGUCcGACACg -3'
miRNA:   3'- gUUAgUGUGUGAgGGGGUAGuUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 112071 0.66 0.99437
Target:  5'- uCAAUCAUcucuugGCGCaUCuCCUCAUCcAACACg -3'
miRNA:   3'- -GUUAGUG------UGUG-AG-GGGGUAGuUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 40212 1.12 0.006325
Target:  5'- aCAAUCACACACUCCCCCAUCAAACACg -3'
miRNA:   3'- -GUUAGUGUGUGAGGGGGUAGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 107825 0.66 0.995904
Target:  5'- aCAAUCuugcCGCGCUCCCgCCAaugauuccUCAG-CGCc -3'
miRNA:   3'- -GUUAGu---GUGUGAGGG-GGU--------AGUUuGUG- -5'
11177 3' -49.3 NC_002816.1 + 109454 0.68 0.983109
Target:  5'- --uUCACACACUCCaCuCCAUaCAAccuguuguACACc -3'
miRNA:   3'- guuAGUGUGUGAGG-G-GGUA-GUU--------UGUG- -5'
11177 3' -49.3 NC_002816.1 + 23336 0.68 0.980959
Target:  5'- cCAAUCACcCGCUacaCCCAUUAAucaACGCa -3'
miRNA:   3'- -GUUAGUGuGUGAgg-GGGUAGUU---UGUG- -5'
11177 3' -49.3 NC_002816.1 + 82953 0.68 0.980959
Target:  5'- uGAUCuACAaacuCUCCCCCuUCGcACACa -3'
miRNA:   3'- gUUAG-UGUgu--GAGGGGGuAGUuUGUG- -5'
11177 3' -49.3 NC_002816.1 + 49636 0.68 0.980959
Target:  5'- -uAUCAuCAU-CUCCUCCAUCAAAcCGCg -3'
miRNA:   3'- guUAGU-GUGuGAGGGGGUAGUUU-GUG- -5'
11177 3' -49.3 NC_002816.1 + 102480 0.68 0.973281
Target:  5'- uUAAUCAcCACAC-CCUCCAaUAAACAUg -3'
miRNA:   3'- -GUUAGU-GUGUGaGGGGGUaGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 7582 0.69 0.959859
Target:  5'- aAAUgCACACugUCUCCC--CGAGCACc -3'
miRNA:   3'- gUUA-GUGUGugAGGGGGuaGUUUGUG- -5'
11177 3' -49.3 NC_002816.1 + 78231 0.7 0.945753
Target:  5'- --cUCAU-CACUCCCCCAUCGuagauucuugugcgAACAUc -3'
miRNA:   3'- guuAGUGuGUGAGGGGGUAGU--------------UUGUG- -5'
11177 3' -49.3 NC_002816.1 + 6225 0.73 0.864123
Target:  5'- ---gCACAUACUCUCCCuUCGccAGCACa -3'
miRNA:   3'- guuaGUGUGUGAGGGGGuAGU--UUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.