Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11177 | 3' | -49.3 | NC_002816.1 | + | 40212 | 1.12 | 0.006325 |
Target: 5'- aCAAUCACACACUCCCCCAUCAAACACg -3' miRNA: 3'- -GUUAGUGUGUGAGGGGGUAGUUUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 84339 | 0.75 | 0.772738 |
Target: 5'- ---gCACACACUgcaCCCCGUCAAaaACACc -3' miRNA: 3'- guuaGUGUGUGAg--GGGGUAGUU--UGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 37885 | 0.74 | 0.811605 |
Target: 5'- --cUCACAUugUCCCCCAccucgCAAaaccGCACa -3' miRNA: 3'- guuAGUGUGugAGGGGGUa----GUU----UGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 6225 | 0.73 | 0.864123 |
Target: 5'- ---gCACAUACUCUCCCuUCGccAGCACa -3' miRNA: 3'- guuaGUGUGUGAGGGGGuAGU--UUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 26390 | 0.73 | 0.864123 |
Target: 5'- --uUUGCACACUCCCCCcacAUCAcacuguggcaacGGCACc -3' miRNA: 3'- guuAGUGUGUGAGGGGG---UAGU------------UUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 43539 | 0.72 | 0.894462 |
Target: 5'- cCAGUCACACAa-CCaCCCAUUucuGCGCg -3' miRNA: 3'- -GUUAGUGUGUgaGG-GGGUAGuu-UGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 8203 | 0.72 | 0.894462 |
Target: 5'- uGAUgGCACGCU-CCUCGUCcGACACg -3' miRNA: 3'- gUUAgUGUGUGAgGGGGUAGuUUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 113955 | 0.7 | 0.932046 |
Target: 5'- aCAAUaCACACugUCCUCCAcCAccACACu -3' miRNA: 3'- -GUUA-GUGUGugAGGGGGUaGUu-UGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 78231 | 0.7 | 0.945753 |
Target: 5'- --cUCAU-CACUCCCCCAUCGuagauucuugugcgAACAUc -3' miRNA: 3'- guuAGUGuGUGAGGGGGUAGU--------------UUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 93087 | 0.69 | 0.970283 |
Target: 5'- ---cCACGCGCUCCUCCAcCGGAUc- -3' miRNA: 3'- guuaGUGUGUGAGGGGGUaGUUUGug -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 60877 | 0.69 | 0.970283 |
Target: 5'- cUAAUCACGCGCgcaCCUCCAaCAA-CACc -3' miRNA: 3'- -GUUAGUGUGUGa--GGGGGUaGUUuGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 37838 | 0.69 | 0.970283 |
Target: 5'- -uGUCGCcguGCUCCCCUcucgCAAACACa -3' miRNA: 3'- guUAGUGug-UGAGGGGGua--GUUUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 7582 | 0.69 | 0.959859 |
Target: 5'- aAAUgCACACugUCUCCC--CGAGCACc -3' miRNA: 3'- gUUA-GUGUGugAGGGGGuaGUUUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 88014 | 0.68 | 0.974417 |
Target: 5'- -cGUCACAaaguugcacacuuuaUACUCCCCCuuuUCGuACACc -3' miRNA: 3'- guUAGUGU---------------GUGAGGGGGu--AGUuUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 107729 | 0.68 | 0.980959 |
Target: 5'- -cGUCGCGCAUUCgCCaCAcgaUCAAACAUc -3' miRNA: 3'- guUAGUGUGUGAGgGG-GU---AGUUUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 105225 | 0.68 | 0.983109 |
Target: 5'- ---aCACGCACUCCCUCGcC--ACACc -3' miRNA: 3'- guuaGUGUGUGAGGGGGUaGuuUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 109454 | 0.68 | 0.983109 |
Target: 5'- --uUCACACACUCCaCuCCAUaCAAccuguuguACACc -3' miRNA: 3'- guuAGUGUGUGAGG-G-GGUA-GUU--------UGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 23336 | 0.68 | 0.980959 |
Target: 5'- cCAAUCACcCGCUacaCCCAUUAAucaACGCa -3' miRNA: 3'- -GUUAGUGuGUGAgg-GGGUAGUU---UGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 82953 | 0.68 | 0.980959 |
Target: 5'- uGAUCuACAaacuCUCCCCCuUCGcACACa -3' miRNA: 3'- gUUAG-UGUgu--GAGGGGGuAGUuUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 49636 | 0.68 | 0.980959 |
Target: 5'- -uAUCAuCAU-CUCCUCCAUCAAAcCGCg -3' miRNA: 3'- guUAGU-GUGuGAGGGGGUAGUUU-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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