Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 21231 | 0.68 | 0.997232 |
Target: 5'- --aGgGUUUGCCAGagGugAAGGUGGCu -3' miRNA: 3'- gugUgCAAGUGGUCa-UugUUUCACCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 105421 | 0.67 | 0.999136 |
Target: 5'- gCACAgUGUUCACUAGUG---GGGUGcGCu -3' miRNA: 3'- -GUGU-GCAAGUGGUCAUuguUUCAC-CG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 80871 | 0.67 | 0.999304 |
Target: 5'- aCACACccaacauuGUUUugUcg-GACAAAGUGGCg -3' miRNA: 3'- -GUGUG--------CAAGugGucaUUGUUUCACCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 11229 | 0.66 | 0.999556 |
Target: 5'- -cCACG-UCAUCAGUGAgAAGGUGu- -3' miRNA: 3'- guGUGCaAGUGGUCAUUgUUUCACcg -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 59299 | 0.66 | 0.999596 |
Target: 5'- gGCugGauugUUGCCAGUuugacuugaacgcggAGCGAAGUGuGCg -3' miRNA: 3'- gUGugCa---AGUGGUCA---------------UUGUUUCAC-CG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 55403 | 0.72 | 0.970769 |
Target: 5'- aACgACGUUCACCAGUuugu-GGUGGa -3' miRNA: 3'- gUG-UGCAAGUGGUCAuuguuUCACCg -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 4016 | 0.67 | 0.998935 |
Target: 5'- aGCAUG-UCACCGacuacaugGACAAGGUGaGCa -3' miRNA: 3'- gUGUGCaAGUGGUca------UUGUUUCAC-CG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 83533 | 0.83 | 0.512137 |
Target: 5'- gACACGggCGCCAGUGuguGCGAAGggGGCa -3' miRNA: 3'- gUGUGCaaGUGGUCAU---UGUUUCa-CCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 59125 | 0.7 | 0.989835 |
Target: 5'- cCAC-CGUUUACCcgcauauuaaacuuAGUGAUAAAGcGGCg -3' miRNA: 3'- -GUGuGCAAGUGG--------------UCAUUGUUUCaCCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 761 | 0.69 | 0.996096 |
Target: 5'- --aACGUaCACCAGUGGCGguagAAGUagGGCc -3' miRNA: 3'- gugUGCAaGUGGUCAUUGU----UUCA--CCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 77412 | 0.69 | 0.994604 |
Target: 5'- aCACACug-CACaauuGGUGACGA-GUGGCg -3' miRNA: 3'- -GUGUGcaaGUGg---UCAUUGUUuCACCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 83737 | 1.14 | 0.008859 |
Target: 5'- gCACACGUUCACCAGUAACAAAGUGGCg -3' miRNA: 3'- -GUGUGCAAGUGGUCAUUGUUUCACCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 16858 | 0.71 | 0.978813 |
Target: 5'- gGCACGgacgUGCCcGUAuuuuacaGCGGAGUGGCa -3' miRNA: 3'- gUGUGCaa--GUGGuCAU-------UGUUUCACCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 85010 | 0.69 | 0.993702 |
Target: 5'- gGCACGguguuagUAUCGGgaaaGACGAGGUGGUg -3' miRNA: 3'- gUGUGCaa-----GUGGUCa---UUGUUUCACCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 121957 | 0.66 | 0.999775 |
Target: 5'- gCACACGgcgcggCAaugggguaaucaCGGUAACGuuGUGGCc -3' miRNA: 3'- -GUGUGCaa----GUg-----------GUCAUUGUuuCACCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 1825 | 0.66 | 0.999725 |
Target: 5'- gACAuCGUUCgACUGGUgggcgGugGGAGUGGUg -3' miRNA: 3'- gUGU-GCAAG-UGGUCA-----UugUUUCACCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 3219 | 0.66 | 0.999725 |
Target: 5'- aCACAaGUUUaauguGCCAcauacAACAAGGUGGCg -3' miRNA: 3'- -GUGUgCAAG-----UGGUca---UUGUUUCACCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 46993 | 0.66 | 0.999556 |
Target: 5'- uCACGCGUUUucUCAGcGAgGuuGUGGCg -3' miRNA: 3'- -GUGUGCAAGu-GGUCaUUgUuuCACCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 74452 | 0.68 | 0.996704 |
Target: 5'- gCGCuGCGUUCACCcc--GCucAGUGGCu -3' miRNA: 3'- -GUG-UGCAAGUGGucauUGuuUCACCG- -5' |
|||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 26767 | 0.68 | 0.998413 |
Target: 5'- aACACG--CGCUAGgcAcCAAGGUGGUa -3' miRNA: 3'- gUGUGCaaGUGGUCauU-GUUUCACCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home