miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11199 5' -46.7 NC_002816.1 + 91935 0.66 0.999735
Target:  5'- uGAAGCUgGAgg-UGGuguACGGUGACACUg -3'
miRNA:   3'- -UUUUGAgUUacaACC---UGCCGUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 77202 0.66 0.999661
Target:  5'- uGAGUUUAGuUGUgUGGACGGCGGCGgCg -3'
miRNA:   3'- uUUUGAGUU-ACA-ACCUGCCGUUGUgG- -5'
11199 5' -46.7 NC_002816.1 + 106423 0.66 0.999661
Target:  5'- gGAGAUUUuacaGUUGGAggaGGCGACACg -3'
miRNA:   3'- -UUUUGAGuua-CAACCUg--CCGUUGUGg -5'
11199 5' -46.7 NC_002816.1 + 75272 0.66 0.999569
Target:  5'- gGAAACuauugUCAAaaucacguguUGUUGGACGcGUuACACCu -3'
miRNA:   3'- -UUUUG-----AGUU----------ACAACCUGC-CGuUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 100362 0.66 0.999456
Target:  5'- uGGGC-CAGUGUUGuauuGCGGUgcaAACACCa -3'
miRNA:   3'- uUUUGaGUUACAACc---UGCCG---UUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 64421 0.66 0.999456
Target:  5'- uGAGCUCGuUGgcGGACGGaacggcuuggguCGACACg -3'
miRNA:   3'- uUUUGAGUuACaaCCUGCC------------GUUGUGg -5'
11199 5' -46.7 NC_002816.1 + 46456 0.67 0.999319
Target:  5'- gAAGGgUCGcgGguuuUUGGugGGCAuguugauggGCACCg -3'
miRNA:   3'- -UUUUgAGUuaC----AACCugCCGU---------UGUGG- -5'
11199 5' -46.7 NC_002816.1 + 32254 0.67 0.999319
Target:  5'- ------gGGUGUgUGGugGGCAcuACGCCu -3'
miRNA:   3'- uuuugagUUACA-ACCugCCGU--UGUGG- -5'
11199 5' -46.7 NC_002816.1 + 11252 0.67 0.999153
Target:  5'- ---uCUCAGUGU---GCGGC-GCACCg -3'
miRNA:   3'- uuuuGAGUUACAaccUGCCGuUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 61845 0.67 0.998954
Target:  5'- ----gUCAGUuuuaaGGAgGGCGACACCa -3'
miRNA:   3'- uuuugAGUUAcaa--CCUgCCGUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 31793 0.67 0.998954
Target:  5'- --uGCUCAGcaacgcgaGGAcaaCGGCAACACCa -3'
miRNA:   3'- uuuUGAGUUacaa----CCU---GCCGUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 82490 0.67 0.998932
Target:  5'- gGAGAUUacGUGccGGACGGCGcacacagACACCg -3'
miRNA:   3'- -UUUUGAguUACaaCCUGCCGU-------UGUGG- -5'
11199 5' -46.7 NC_002816.1 + 93576 0.67 0.998432
Target:  5'- --uGC-CAuguUGUUGGACGGUuuuGCACg -3'
miRNA:   3'- uuuUGaGUu--ACAACCUGCCGu--UGUGg -5'
11199 5' -46.7 NC_002816.1 + 101362 0.67 0.998432
Target:  5'- --cGCUCAcuauucaacaccAUGUUGGAUgagGGaGACACCg -3'
miRNA:   3'- uuuUGAGU------------UACAACCUG---CCgUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 35682 0.68 0.998097
Target:  5'- ---cCUCGGUGaUGGAUGGCuGCAaauCCu -3'
miRNA:   3'- uuuuGAGUUACaACCUGCCGuUGU---GG- -5'
11199 5' -46.7 NC_002816.1 + 110582 0.68 0.997247
Target:  5'- cAGAGCUUAGga--GGugGGCGACGgCg -3'
miRNA:   3'- -UUUUGAGUUacaaCCugCCGUUGUgG- -5'
11199 5' -46.7 NC_002816.1 + 82006 0.68 0.997247
Target:  5'- ---uUUCAAgggGUUGGACguGGC-GCGCCa -3'
miRNA:   3'- uuuuGAGUUa--CAACCUG--CCGuUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 2411 0.68 0.996715
Target:  5'- cAAACUCAuuagGUUGG-CGG-AGCACUa -3'
miRNA:   3'- uUUUGAGUua--CAACCuGCCgUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 12669 0.68 0.996102
Target:  5'- -cGACUUggUGgUGca-GGCAACACCg -3'
miRNA:   3'- uuUUGAGuuACaACcugCCGUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 41524 0.69 0.995398
Target:  5'- aGAAACUCAGUGcacaaUUGGAUaGCAGucgauCGCCg -3'
miRNA:   3'- -UUUUGAGUUAC-----AACCUGcCGUU-----GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.