Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11199 | 5' | -46.7 | NC_002816.1 | + | 46456 | 0.67 | 0.999319 |
Target: 5'- gAAGGgUCGcgGguuuUUGGugGGCAuguugauggGCACCg -3' miRNA: 3'- -UUUUgAGUuaC----AACCugCCGU---------UGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 100362 | 0.66 | 0.999456 |
Target: 5'- uGGGC-CAGUGUUGuauuGCGGUgcaAACACCa -3' miRNA: 3'- uUUUGaGUUACAACc---UGCCG---UUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 75272 | 0.66 | 0.999569 |
Target: 5'- gGAAACuauugUCAAaaucacguguUGUUGGACGcGUuACACCu -3' miRNA: 3'- -UUUUG-----AGUU----------ACAACCUGC-CGuUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 77202 | 0.66 | 0.999661 |
Target: 5'- uGAGUUUAGuUGUgUGGACGGCGGCGgCg -3' miRNA: 3'- uUUUGAGUU-ACA-ACCUGCCGUUGUgG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 91935 | 0.66 | 0.999735 |
Target: 5'- uGAAGCUgGAgg-UGGuguACGGUGACACUg -3' miRNA: 3'- -UUUUGAgUUacaACC---UGCCGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 82006 | 0.68 | 0.997247 |
Target: 5'- ---uUUCAAgggGUUGGACguGGC-GCGCCa -3' miRNA: 3'- uuuuGAGUUa--CAACCUG--CCGuUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 17611 | 0.73 | 0.941724 |
Target: 5'- uGAGugUCGAUGUUGG-UGGUGAgauCACCa -3' miRNA: 3'- -UUUugAGUUACAACCuGCCGUU---GUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 41357 | 0.73 | 0.946618 |
Target: 5'- -cAGCUCGGcGUUGGGCGuauuccGUAGCACCc -3' miRNA: 3'- uuUUGAGUUaCAACCUGC------CGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 32722 | 0.7 | 0.988715 |
Target: 5'- -cAGCUCGuUGgggUGGAcacgcacggcCGGCAACGCUa -3' miRNA: 3'- uuUUGAGUuACa--ACCU----------GCCGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 37191 | 0.69 | 0.993679 |
Target: 5'- ---gUUUggUGUggUGGACgGGCGACACUu -3' miRNA: 3'- uuuuGAGuuACA--ACCUG-CCGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 2411 | 0.68 | 0.996715 |
Target: 5'- cAAACUCAuuagGUUGG-CGG-AGCACUa -3' miRNA: 3'- uUUUGAGUua--CAACCuGCCgUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 31793 | 0.67 | 0.998954 |
Target: 5'- --uGCUCAGcaacgcgaGGAcaaCGGCAACACCa -3' miRNA: 3'- uuuUGAGUUacaa----CCU---GCCGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 99956 | 0.7 | 0.987094 |
Target: 5'- --cGCUCAuc-UUGGGCGGUauaaucucguuGACACCg -3' miRNA: 3'- uuuUGAGUuacAACCUGCCG-----------UUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 61845 | 0.67 | 0.998954 |
Target: 5'- ----gUCAGUuuuaaGGAgGGCGACACCa -3' miRNA: 3'- uuuugAGUUAcaa--CCUgCCGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 17712 | 0.69 | 0.995398 |
Target: 5'- ---uCUCAAUGUUGGGCaGaGCGuuaACCa -3' miRNA: 3'- uuuuGAGUUACAACCUG-C-CGUug-UGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 77811 | 0.71 | 0.982039 |
Target: 5'- --cGCUCAA-GUUGGACGGUGugcguggcaaagcguACAUCg -3' miRNA: 3'- uuuUGAGUUaCAACCUGCCGU---------------UGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 93576 | 0.67 | 0.998432 |
Target: 5'- --uGC-CAuguUGUUGGACGGUuuuGCACg -3' miRNA: 3'- uuuUGaGUu--ACAACCUGCCGu--UGUGg -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 32254 | 0.67 | 0.999319 |
Target: 5'- ------gGGUGUgUGGugGGCAcuACGCCu -3' miRNA: 3'- uuuugagUUACA-ACCugCCGU--UGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 64421 | 0.66 | 0.999456 |
Target: 5'- uGAGCUCGuUGgcGGACGGaacggcuuggguCGACACg -3' miRNA: 3'- uUUUGAGUuACaaCCUGCC------------GUUGUGg -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 11252 | 0.67 | 0.999153 |
Target: 5'- ---uCUCAGUGU---GCGGC-GCACCg -3' miRNA: 3'- uuuuGAGUUACAaccUGCCGuUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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