miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11282 3' -50.4 NC_003083.1 + 73658 0.66 0.987743
Target:  5'- --gGCGUUGuugCAAcg-GGCGCgGGCg -3'
miRNA:   3'- aaaCGCAACug-GUUauaUCGCGgCCG- -5'
11282 3' -50.4 NC_003083.1 + 93211 0.66 0.986052
Target:  5'- --cGCGUcuaUGgcuACCGGUAUGGgGCCuGCu -3'
miRNA:   3'- aaaCGCA---AC---UGGUUAUAUCgCGGcCG- -5'
11282 3' -50.4 NC_003083.1 + 61619 0.66 0.98339
Target:  5'- -gUGCGUUauuagGACCGGcuucugcgacgGGCGCUGGUg -3'
miRNA:   3'- aaACGCAA-----CUGGUUaua--------UCGCGGCCG- -5'
11282 3' -50.4 NC_003083.1 + 59610 0.67 0.974795
Target:  5'- --gGUGUUGGCgcgCGAUGUgGGCGCCgucgGGCu -3'
miRNA:   3'- aaaCGCAACUG---GUUAUA-UCGCGG----CCG- -5'
11282 3' -50.4 NC_003083.1 + 89753 0.67 0.971917
Target:  5'- ---uUGUUGACUAAcaccGCGCUGGCg -3'
miRNA:   3'- aaacGCAACUGGUUauauCGCGGCCG- -5'
11282 3' -50.4 NC_003083.1 + 64506 0.67 0.968486
Target:  5'- --gGCGUUGGCgAAgggGUuggcgaugguggaGGCGuuGGCg -3'
miRNA:   3'- aaaCGCAACUGgUUa--UA-------------UCGCggCCG- -5'
11282 3' -50.4 NC_003083.1 + 23057 0.68 0.961877
Target:  5'- --cGUGUUGACCAA-----CGCCGGg -3'
miRNA:   3'- aaaCGCAACUGGUUauaucGCGGCCg -5'
11282 3' -50.4 NC_003083.1 + 118307 0.68 0.958037
Target:  5'- --gGCGgUGGCgGggGUGGUGCUGGUa -3'
miRNA:   3'- aaaCGCaACUGgUuaUAUCGCGGCCG- -5'
11282 3' -50.4 NC_003083.1 + 38899 0.68 0.958037
Target:  5'- --cGCGc-GAUUAAUgcgcuGUAGCGCCGGUc -3'
miRNA:   3'- aaaCGCaaCUGGUUA-----UAUCGCGGCCG- -5'
11282 3' -50.4 NC_003083.1 + 114174 0.69 0.940066
Target:  5'- --aGUGgacGACCugcggGGUGCCGGCa -3'
miRNA:   3'- aaaCGCaa-CUGGuuauaUCGCGGCCG- -5'
11282 3' -50.4 NC_003083.1 + 35987 0.69 0.938545
Target:  5'- gUUGCGUUGAUUAuuaagAGCGCaacacauguacgauCGGCg -3'
miRNA:   3'- aAACGCAACUGGUuaua-UCGCG--------------GCCG- -5'
11282 3' -50.4 NC_003083.1 + 27057 0.7 0.898163
Target:  5'- -cUGCGUUGGcgguguCCAAguu-GCGCaCGGCa -3'
miRNA:   3'- aaACGCAACU------GGUUauauCGCG-GCCG- -5'
11282 3' -50.4 NC_003083.1 + 64410 0.7 0.891095
Target:  5'- --gGCGUUGGCgaCGGUGuUGGCGaCGGCg -3'
miRNA:   3'- aaaCGCAACUG--GUUAU-AUCGCgGCCG- -5'
11282 3' -50.4 NC_003083.1 + 39228 0.7 0.888195
Target:  5'- gUUGCGggcuuuaaaacGCCGGUucaaaAGCGCCGGCg -3'
miRNA:   3'- aAACGCaac--------UGGUUAua---UCGCGGCCG- -5'
11282 3' -50.4 NC_003083.1 + 32259 0.71 0.876181
Target:  5'- aUUGUGUUGACgug-GUGGUGCUGGg -3'
miRNA:   3'- aAACGCAACUGguuaUAUCGCGGCCg -5'
11282 3' -50.4 NC_003083.1 + 78992 0.73 0.777955
Target:  5'- --aGUGUUuaGAUUAAUuucguUAGCGCCGGCa -3'
miRNA:   3'- aaaCGCAA--CUGGUUAu----AUCGCGGCCG- -5'
11282 3' -50.4 NC_003083.1 + 22905 0.73 0.757746
Target:  5'- cUUGUGuUUGACCAAUAcccGGCGuuGGUc -3'
miRNA:   3'- aAACGC-AACUGGUUAUa--UCGCggCCG- -5'
11282 3' -50.4 NC_003083.1 + 1809 0.73 0.746407
Target:  5'- --aGCGUUGACCAccugccgucgucgGUGca-CGCCGGCg -3'
miRNA:   3'- aaaCGCAACUGGU-------------UAUaucGCGGCCG- -5'
11282 3' -50.4 NC_003083.1 + 88047 0.74 0.737026
Target:  5'- -gUGCGUguugacgcgagacggGGCCAAUAUAaaaauuuggagccGCGCCGGUc -3'
miRNA:   3'- aaACGCAa--------------CUGGUUAUAU-------------CGCGGCCG- -5'
11282 3' -50.4 NC_003083.1 + 64308 0.74 0.725446
Target:  5'- --gGUGUUGGCCAaaGUGUuggagaaGGCGuuGGCg -3'
miRNA:   3'- aaaCGCAACUGGU--UAUA-------UCGCggCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.