Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11283 | 3' | -53 | NC_003083.1 | + | 44724 | 0.68 | 0.868446 |
Target: 5'- aAGCACCaUGCGCAuCAGU--UGGCUAa -3' miRNA: 3'- gUUGUGGcACGCGU-GUUAguACCGGU- -5' |
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11283 | 3' | -53 | NC_003083.1 | + | 102449 | 0.69 | 0.826774 |
Target: 5'- cCAACGCCGUGUuaGCGCA---AUGGCg- -3' miRNA: 3'- -GUUGUGGCACG--CGUGUuagUACCGgu -5' |
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11283 | 3' | -53 | NC_003083.1 | + | 41829 | 0.7 | 0.799374 |
Target: 5'- cCAugACgCGUGCGCACucugCGUGGUUu -3' miRNA: 3'- -GUugUG-GCACGCGUGuua-GUACCGGu -5' |
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11283 | 3' | -53 | NC_003083.1 | + | 100752 | 0.7 | 0.780261 |
Target: 5'- -cACGCCGuUGCGCACAugcgCGUGuCCAg -3' miRNA: 3'- guUGUGGC-ACGCGUGUua--GUACcGGU- -5' |
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11283 | 3' | -53 | NC_003083.1 | + | 64493 | 0.7 | 0.760564 |
Target: 5'- cCAACGCCGU-CGC-CAAcacUAUGGCCAa -3' miRNA: 3'- -GUUGUGGCAcGCGuGUUa--GUACCGGU- -5' |
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11283 | 3' | -53 | NC_003083.1 | + | 30526 | 0.79 | 0.327161 |
Target: 5'- aCGACACCGccGCGCACA---AUGGCCAu -3' miRNA: 3'- -GUUGUGGCa-CGCGUGUuagUACCGGU- -5' |
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11283 | 3' | -53 | NC_003083.1 | + | 43443 | 1.09 | 0.003834 |
Target: 5'- aCAACACCGUGCGCACAAUCAUGGCCAc -3' miRNA: 3'- -GUUGUGGCACGCGUGUUAGUACCGGU- -5' |
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11283 | 3' | -53 | NC_003083.1 | + | 73688 | 0.66 | 0.943758 |
Target: 5'- --uUAaaGUGCGCGauuGGUCAUGGCUAu -3' miRNA: 3'- guuGUggCACGCGUg--UUAGUACCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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