miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11289 3' -58.4 NC_003083.1 + 114337 0.66 0.79944
Target:  5'- aCCaGCGCCCGUuuacccuaUGcCGGC-AC-CCCGCa -3'
miRNA:   3'- -GG-CGCGGGCA--------AC-GUUGuUGcGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 51292 0.66 0.798552
Target:  5'- gCGCGCgCGuUUGUuuGACGGCGCguuagagcgcaagCCGCGu -3'
miRNA:   3'- gGCGCGgGC-AACG--UUGUUGCG-------------GGCGC- -5'
11289 3' -58.4 NC_003083.1 + 61773 0.66 0.789595
Target:  5'- aCCaGCGCCCGUcGCAgaagccgguccuaAUAACGCaCaagGCGg -3'
miRNA:   3'- -GG-CGCGGGCAaCGU-------------UGUUGCG-Gg--CGC- -5'
11289 3' -58.4 NC_003083.1 + 94338 0.66 0.781414
Target:  5'- aCGCGCCCGccaaacaCGACGaagGCGCCCcaGCu -3'
miRNA:   3'- gGCGCGGGCaac----GUUGU---UGCGGG--CGc -5'
11289 3' -58.4 NC_003083.1 + 88261 0.66 0.772199
Target:  5'- cCCGCGCaaaCGcagcGCAGCGgGCGCggugCCGCGa -3'
miRNA:   3'- -GGCGCGg--GCaa--CGUUGU-UGCG----GGCGC- -5'
11289 3' -58.4 NC_003083.1 + 50688 0.66 0.753413
Target:  5'- aCGCGCCCaUUGaaAACGuuGCGCCUGUu -3'
miRNA:   3'- gGCGCGGGcAACg-UUGU--UGCGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 36899 0.66 0.753413
Target:  5'- gCCGCGCCauuGUugaauuUGCAACAcuauaGCGCagCGCa -3'
miRNA:   3'- -GGCGCGGg--CA------ACGUUGU-----UGCGg-GCGc -5'
11289 3' -58.4 NC_003083.1 + 32152 0.67 0.747692
Target:  5'- gCGCGUCUGUuccaaaUGCGgcGCGucauaguccauaguuGCGCCUGCGu -3'
miRNA:   3'- gGCGCGGGCA------ACGU--UGU---------------UGCGGGCGC- -5'
11289 3' -58.4 NC_003083.1 + 96562 0.67 0.743858
Target:  5'- gCCGCGUuuGUccacaaaGCAGCGGCGCUCuuGUGu -3'
miRNA:   3'- -GGCGCGggCAa------CGUUGUUGCGGG--CGC- -5'
11289 3' -58.4 NC_003083.1 + 9341 0.67 0.734208
Target:  5'- gCGCGCgCGaccggcaauugaUUGCAGaAGCGCuuGCGg -3'
miRNA:   3'- gGCGCGgGC------------AACGUUgUUGCGggCGC- -5'
11289 3' -58.4 NC_003083.1 + 23414 0.67 0.72447
Target:  5'- gCCGUGCCCGUUaauaaaAACAcuauACGCgCGCc -3'
miRNA:   3'- -GGCGCGGGCAAcg----UUGU----UGCGgGCGc -5'
11289 3' -58.4 NC_003083.1 + 46164 0.67 0.714655
Target:  5'- aUCGCGCuuGUUG-----GCGUCCGCGc -3'
miRNA:   3'- -GGCGCGggCAACguuguUGCGGGCGC- -5'
11289 3' -58.4 NC_003083.1 + 5994 0.67 0.714655
Target:  5'- aCGCGUaCCGgacgcGcCAACAAUGCCCgGCGu -3'
miRNA:   3'- gGCGCG-GGCaa---C-GUUGUUGCGGG-CGC- -5'
11289 3' -58.4 NC_003083.1 + 44817 0.67 0.714655
Target:  5'- uUGUGCCCG--GCAACGGCGaUCGCa -3'
miRNA:   3'- gGCGCGGGCaaCGUUGUUGCgGGCGc -5'
11289 3' -58.4 NC_003083.1 + 102469 0.67 0.704771
Target:  5'- gCCGCGaCCUGUcGCAGacucCAACGCCguguuaGCGc -3'
miRNA:   3'- -GGCGC-GGGCAaCGUU----GUUGCGGg-----CGC- -5'
11289 3' -58.4 NC_003083.1 + 4489 0.67 0.704771
Target:  5'- aCGCG-UCGUUGaCGcACAGCGCgCCGCu -3'
miRNA:   3'- gGCGCgGGCAAC-GU-UGUUGCG-GGCGc -5'
11289 3' -58.4 NC_003083.1 + 74189 0.68 0.668754
Target:  5'- aCGCGgCCGuUUGCGcguuguuuauauuguGCAACauGUCCGCGg -3'
miRNA:   3'- gGCGCgGGC-AACGU---------------UGUUG--CGGGCGC- -5'
11289 3' -58.4 NC_003083.1 + 2009 0.68 0.66573
Target:  5'- aCGCGUagaaauugcggcggaUCGUcacauguuggaggcUGCGGCGACGCCgGCGu -3'
miRNA:   3'- gGCGCG---------------GGCA--------------ACGUUGUUGCGGgCGC- -5'
11289 3' -58.4 NC_003083.1 + 28332 0.68 0.654623
Target:  5'- -gGCgGCCCGgggGCAAUGcACGCgCGCGg -3'
miRNA:   3'- ggCG-CGGGCaa-CGUUGU-UGCGgGCGC- -5'
11289 3' -58.4 NC_003083.1 + 29027 0.68 0.644508
Target:  5'- aCCGCGCUuuucgCGUUGCAACAuccauccgAUGCCacuuuucugaUGCGg -3'
miRNA:   3'- -GGCGCGG-----GCAACGUUGU--------UGCGG----------GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.