miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11289 5' -52.1 NC_003083.1 + 58717 0.7 0.837164
Target:  5'- cGCGuuGggAUCGUGgcgcuaggcGCAACACGUu -3'
miRNA:   3'- aCGCggCuaUAGCGCaa-------CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 58830 0.71 0.782389
Target:  5'- gGCGCgCGcGUAUCGCacggGUUGauCGGCACGCa -3'
miRNA:   3'- aCGCG-GC-UAUAGCG----CAAC--GUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 59109 0.69 0.898647
Target:  5'- --aGCCGAUAUUG----GCGACACGCa -3'
miRNA:   3'- acgCGGCUAUAGCgcaaCGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 61517 0.7 0.861938
Target:  5'- aUGCGCCac--UUGUGUucgcaaaauuaUGCAACGCGCc -3'
miRNA:   3'- -ACGCGGcuauAGCGCA-----------ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 62937 0.67 0.953094
Target:  5'- aUGUGCCGugcgagCGCGUUGa---ACGCc -3'
miRNA:   3'- -ACGCGGCuaua--GCGCAACguugUGCG- -5'
11289 5' -52.1 NC_003083.1 + 63251 0.68 0.934414
Target:  5'- aGUGCCGugugggcAUUGCGUguugaGUAGCGCGUu -3'
miRNA:   3'- aCGCGGCua-----UAGCGCAa----CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 65973 0.7 0.869755
Target:  5'- cGCGCCGGUAauaaagucuUCGCaGUacuuCAACACGUu -3'
miRNA:   3'- aCGCGGCUAU---------AGCG-CAac--GUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 67133 0.66 0.973783
Target:  5'- cGCGUCGGUAUUuuacaaCGUggGCcaaaAACACGCg -3'
miRNA:   3'- aCGCGGCUAUAGc-----GCAa-CG----UUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 69527 0.71 0.819621
Target:  5'- aUGUGUCGGUAUUuggGCGUUGUAAUGCa- -3'
miRNA:   3'- -ACGCGGCUAUAG---CGCAACGUUGUGcg -5'
11289 5' -52.1 NC_003083.1 + 71687 0.66 0.976448
Target:  5'- aUG-GCCGGc-UUGUGUUGaAACACGCa -3'
miRNA:   3'- -ACgCGGCUauAGCGCAACgUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 73761 1.14 0.002651
Target:  5'- aUGCGCCGAUAUCGCGUUGCAACACGCa -3'
miRNA:   3'- -ACGCGGCUAUAGCGCAACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 73802 0.7 0.853896
Target:  5'- uUGCGCCcg---CGCccGUUGCAACAaCGCc -3'
miRNA:   3'- -ACGCGGcuauaGCG--CAACGUUGU-GCG- -5'
11289 5' -52.1 NC_003083.1 + 74190 0.69 0.891791
Target:  5'- cGCgGCCGuuugCGCGUuguuuauauugUGCAACAUGUc -3'
miRNA:   3'- aCG-CGGCuauaGCGCA-----------ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 75070 0.7 0.853896
Target:  5'- aGCGUCGuUAaCGCGUuugacaaauauuUGCAuuuGCACGCu -3'
miRNA:   3'- aCGCGGCuAUaGCGCA------------ACGU---UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 79966 0.71 0.810568
Target:  5'- cGCGaCCGucaAUCGCGUcagucUGCAAUAUGUc -3'
miRNA:   3'- aCGC-GGCua-UAGCGCA-----ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 81265 0.71 0.82849
Target:  5'- gGCGU--GUAaCGCGUUGCAguuuucgcACACGCg -3'
miRNA:   3'- aCGCGgcUAUaGCGCAACGU--------UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 81846 0.66 0.964486
Target:  5'- uUGCgGCCGAUGUugaauauuauucUGCGUgcccggccagUGCcaGAUACGCg -3'
miRNA:   3'- -ACG-CGGCUAUA------------GCGCA----------ACG--UUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 84499 0.67 0.951409
Target:  5'- cGCGCCGAUAcagguuggccaugCGCGacgguaUGCAcACAgGCa -3'
miRNA:   3'- aCGCGGCUAUa------------GCGCa-----ACGU-UGUgCG- -5'
11289 5' -52.1 NC_003083.1 + 87340 0.68 0.9291
Target:  5'- aUGuCGCCGcUGUuaaugucggcgaCGCGUccgUGUGGCGCGCa -3'
miRNA:   3'- -AC-GCGGCuAUA------------GCGCA---ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 88090 0.7 0.861938
Target:  5'- cGCGCCGGUcguuacccUCGCG--GCAcCGCGCc -3'
miRNA:   3'- aCGCGGCUAu-------AGCGCaaCGUuGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.