miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11289 5' -52.1 NC_003083.1 + 29211 0.66 0.967809
Target:  5'- cGCGUCaAUggcAUCGCGUUGUAuuagaugaaGCGCa -3'
miRNA:   3'- aCGCGGcUA---UAGCGCAACGUug-------UGCG- -5'
11289 5' -52.1 NC_003083.1 + 30395 0.75 0.605964
Target:  5'- cGCGgCGGUGUCGUgcugugccaacGUUGCAACGCa- -3'
miRNA:   3'- aCGCgGCUAUAGCG-----------CAACGUUGUGcg -5'
11289 5' -52.1 NC_003083.1 + 30641 0.71 0.791942
Target:  5'- aUGCGcCCGAUGUCGuCGUaGUuuaACGCu -3'
miRNA:   3'- -ACGC-GGCUAUAGC-GCAaCGuugUGCG- -5'
11289 5' -52.1 NC_003083.1 + 30666 0.67 0.953094
Target:  5'- gGCaaaGCCGAcaaUGUgCGgGUUGUAGCgGCGCa -3'
miRNA:   3'- aCG---CGGCU---AUA-GCgCAACGUUG-UGCG- -5'
11289 5' -52.1 NC_003083.1 + 31530 0.7 0.861938
Target:  5'- uUGCGCgGGUAUC-CGUUGCGcCAaauUGCu -3'
miRNA:   3'- -ACGCGgCUAUAGcGCAACGUuGU---GCG- -5'
11289 5' -52.1 NC_003083.1 + 32315 0.67 0.957134
Target:  5'- aGCGCCGGcagugUGCGUUuCGGCcaGCGCc -3'
miRNA:   3'- aCGCGGCUaua--GCGCAAcGUUG--UGCG- -5'
11289 5' -52.1 NC_003083.1 + 35041 0.68 0.934414
Target:  5'- cUGgGCaGAcg-CGCGUUGCGGCACa- -3'
miRNA:   3'- -ACgCGgCUauaGCGCAACGUUGUGcg -5'
11289 5' -52.1 NC_003083.1 + 35673 0.66 0.964486
Target:  5'- gGCGUacacGUCGCG-UGCAAaaaGCGCg -3'
miRNA:   3'- aCGCGgcuaUAGCGCaACGUUg--UGCG- -5'
11289 5' -52.1 NC_003083.1 + 38067 0.66 0.970906
Target:  5'- gGUGCCGcggcacGUCGCGUguucuuCAACGCGg -3'
miRNA:   3'- aCGCGGCua----UAGCGCAac----GUUGUGCg -5'
11289 5' -52.1 NC_003083.1 + 42306 0.71 0.791942
Target:  5'- cUGUGCaaCGAUAcuuuggaCGCGaugUGCAGCACGCu -3'
miRNA:   3'- -ACGCG--GCUAUa------GCGCa--ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 42665 0.66 0.973783
Target:  5'- -aUGCCGuuggcguUCGCGUuaugGCAauuGCACGCc -3'
miRNA:   3'- acGCGGCuau----AGCGCAa---CGU---UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 43479 0.69 0.905252
Target:  5'- uUGCGUaacugAUCGCGcacggcuuugGCGGCACGCg -3'
miRNA:   3'- -ACGCGgcua-UAGCGCaa--------CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 43947 0.69 0.884687
Target:  5'- cUGCGCCGcaaa-GCGUgUGCGGCACu- -3'
miRNA:   3'- -ACGCGGCuauagCGCA-ACGUUGUGcg -5'
11289 5' -52.1 NC_003083.1 + 44090 0.68 0.923527
Target:  5'- aGUGCCGcacaCGCuUUGCGGCGCaGCg -3'
miRNA:   3'- aCGCGGCuauaGCGcAACGUUGUG-CG- -5'
11289 5' -52.1 NC_003083.1 + 44092 0.73 0.695264
Target:  5'- aGCGCgauauuuguaguauaCGuuuuUGUaCGCGUUGCGACAUGCu -3'
miRNA:   3'- aCGCG---------------GCu---AUA-GCGCAACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 51444 0.73 0.701557
Target:  5'- cGCGCaacccguuGUGUCGCGUguuugGCGugACGCu -3'
miRNA:   3'- aCGCGgc------UAUAGCGCAa----CGUugUGCG- -5'
11289 5' -52.1 NC_003083.1 + 55982 0.67 0.944265
Target:  5'- cGUGCCGuauUAUCGUuuagGCAACcacgaACGCg -3'
miRNA:   3'- aCGCGGCu--AUAGCGcaa-CGUUG-----UGCG- -5'
11289 5' -52.1 NC_003083.1 + 56388 0.69 0.87734
Target:  5'- cGUGCCGA-GUgGCcaaUUGCGACAUGUa -3'
miRNA:   3'- aCGCGGCUaUAgCGc--AACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 56916 0.66 0.960929
Target:  5'- gGCGCCGAca-CGCucgGCAAagACGCa -3'
miRNA:   3'- aCGCGGCUauaGCGcaaCGUUg-UGCG- -5'
11289 5' -52.1 NC_003083.1 + 58681 0.69 0.87734
Target:  5'- cGUGCCGAUcaaCcCG-UGCGAUACGCg -3'
miRNA:   3'- aCGCGGCUAua-GcGCaACGUUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.