Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11289 | 5' | -52.1 | NC_003083.1 | + | 73802 | 0.7 | 0.853896 |
Target: 5'- uUGCGCCcg---CGCccGUUGCAACAaCGCc -3' miRNA: 3'- -ACGCGGcuauaGCG--CAACGUUGU-GCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 73761 | 1.14 | 0.002651 |
Target: 5'- aUGCGCCGAUAUCGCGUUGCAACACGCa -3' miRNA: 3'- -ACGCGGCUAUAGCGCAACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 71687 | 0.66 | 0.976448 |
Target: 5'- aUG-GCCGGc-UUGUGUUGaAACACGCa -3' miRNA: 3'- -ACgCGGCUauAGCGCAACgUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 69527 | 0.71 | 0.819621 |
Target: 5'- aUGUGUCGGUAUUuggGCGUUGUAAUGCa- -3' miRNA: 3'- -ACGCGGCUAUAG---CGCAACGUUGUGcg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 67133 | 0.66 | 0.973783 |
Target: 5'- cGCGUCGGUAUUuuacaaCGUggGCcaaaAACACGCg -3' miRNA: 3'- aCGCGGCUAUAGc-----GCAa-CG----UUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 65973 | 0.7 | 0.869755 |
Target: 5'- cGCGCCGGUAauaaagucuUCGCaGUacuuCAACACGUu -3' miRNA: 3'- aCGCGGCUAU---------AGCG-CAac--GUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 63251 | 0.68 | 0.934414 |
Target: 5'- aGUGCCGugugggcAUUGCGUguugaGUAGCGCGUu -3' miRNA: 3'- aCGCGGCua-----UAGCGCAa----CGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 62937 | 0.67 | 0.953094 |
Target: 5'- aUGUGCCGugcgagCGCGUUGa---ACGCc -3' miRNA: 3'- -ACGCGGCuaua--GCGCAACguugUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 61517 | 0.7 | 0.861938 |
Target: 5'- aUGCGCCac--UUGUGUucgcaaaauuaUGCAACGCGCc -3' miRNA: 3'- -ACGCGGcuauAGCGCA-----------ACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 59109 | 0.69 | 0.898647 |
Target: 5'- --aGCCGAUAUUG----GCGACACGCa -3' miRNA: 3'- acgCGGCUAUAGCgcaaCGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 58830 | 0.71 | 0.782389 |
Target: 5'- gGCGCgCGcGUAUCGCacggGUUGauCGGCACGCa -3' miRNA: 3'- aCGCG-GC-UAUAGCG----CAAC--GUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 58717 | 0.7 | 0.837164 |
Target: 5'- cGCGuuGggAUCGUGgcgcuaggcGCAACACGUu -3' miRNA: 3'- aCGCggCuaUAGCGCaa-------CGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 58681 | 0.69 | 0.87734 |
Target: 5'- cGUGCCGAUcaaCcCG-UGCGAUACGCg -3' miRNA: 3'- aCGCGGCUAua-GcGCaACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 56916 | 0.66 | 0.960929 |
Target: 5'- gGCGCCGAca-CGCucgGCAAagACGCa -3' miRNA: 3'- aCGCGGCUauaGCGcaaCGUUg-UGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 56388 | 0.69 | 0.87734 |
Target: 5'- cGUGCCGA-GUgGCcaaUUGCGACAUGUa -3' miRNA: 3'- aCGCGGCUaUAgCGc--AACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 55982 | 0.67 | 0.944265 |
Target: 5'- cGUGCCGuauUAUCGUuuagGCAACcacgaACGCg -3' miRNA: 3'- aCGCGGCu--AUAGCGcaa-CGUUG-----UGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 51444 | 0.73 | 0.701557 |
Target: 5'- cGCGCaacccguuGUGUCGCGUguuugGCGugACGCu -3' miRNA: 3'- aCGCGgc------UAUAGCGCAa----CGUugUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 44092 | 0.73 | 0.695264 |
Target: 5'- aGCGCgauauuuguaguauaCGuuuuUGUaCGCGUUGCGACAUGCu -3' miRNA: 3'- aCGCG---------------GCu---AUA-GCGCAACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 44090 | 0.68 | 0.923527 |
Target: 5'- aGUGCCGcacaCGCuUUGCGGCGCaGCg -3' miRNA: 3'- aCGCGGCuauaGCGcAACGUUGUG-CG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 43947 | 0.69 | 0.884687 |
Target: 5'- cUGCGCCGcaaa-GCGUgUGCGGCACu- -3' miRNA: 3'- -ACGCGGCuauagCGCA-ACGUUGUGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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