miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11289 5' -52.1 NC_003083.1 + 113661 0.74 0.648627
Target:  5'- cGUGCUGcgcgCGCGUUGUggaAGCGCGCa -3'
miRNA:   3'- aCGCGGCuauaGCGCAACG---UUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 112817 0.67 0.957134
Target:  5'- uUGCGaCCGAUAacgCGCGaUUGUuaacAACAaCGCc -3'
miRNA:   3'- -ACGC-GGCUAUa--GCGC-AACG----UUGU-GCG- -5'
11289 5' -52.1 NC_003083.1 + 112477 0.72 0.77269
Target:  5'- gGUGUCGAUcgCGCGUUaCAGCAaaaccCGCg -3'
miRNA:   3'- aCGCGGCUAuaGCGCAAcGUUGU-----GCG- -5'
11289 5' -52.1 NC_003083.1 + 109496 0.66 0.970606
Target:  5'- cGCGCaGAcccgugaugUGUCGCGUgcgcuucgcuucUGCGgacuuacGCACGCu -3'
miRNA:   3'- aCGCGgCU---------AUAGCGCA------------ACGU-------UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 102139 0.7 0.861938
Target:  5'- gGCGCCGugcgCGCGUUGUAcguuAUggGCg -3'
miRNA:   3'- aCGCGGCuauaGCGCAACGU----UGugCG- -5'
11289 5' -52.1 NC_003083.1 + 99752 0.67 0.939468
Target:  5'- cGCGCCGAuUAUCuGCacguUUGaauuGCGCGCg -3'
miRNA:   3'- aCGCGGCU-AUAG-CGc---AACgu--UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 99047 0.66 0.973783
Target:  5'- cGCGCUGcgcuugcuuUUGCuuuugGCAACGCGCa -3'
miRNA:   3'- aCGCGGCuau------AGCGcaa--CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 96706 0.66 0.959816
Target:  5'- gGCGCCGGUcggggaAUCGCGcgaacuuaucgaaucGUuGCACGCc -3'
miRNA:   3'- aCGCGGCUA------UAGCGCaa-------------CGuUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 94192 0.66 0.964486
Target:  5'- gGCGCCuucGUCGUGUuugGCGgGCGCGUc -3'
miRNA:   3'- aCGCGGcuaUAGCGCAa--CGU-UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 92376 0.74 0.627287
Target:  5'- uUGUGUaCGGUGUCGUG-UGCAGCGCaGCu -3'
miRNA:   3'- -ACGCG-GCUAUAGCGCaACGUUGUG-CG- -5'
11289 5' -52.1 NC_003083.1 + 89894 0.69 0.905252
Target:  5'- aGCuGCCGG-AUCuGUaUUGCAACGCGUg -3'
miRNA:   3'- aCG-CGGCUaUAG-CGcAACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 88189 0.67 0.944265
Target:  5'- gGCcCCGuc-UCGCGU--CAACACGCa -3'
miRNA:   3'- aCGcGGCuauAGCGCAacGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 88090 0.7 0.861938
Target:  5'- cGCGCCGGUcguuacccUCGCG--GCAcCGCGCc -3'
miRNA:   3'- aCGCGGCUAu-------AGCGCaaCGUuGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 87340 0.68 0.9291
Target:  5'- aUGuCGCCGcUGUuaaugucggcgaCGCGUccgUGUGGCGCGCa -3'
miRNA:   3'- -AC-GCGGCuAUA------------GCGCA---ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 84499 0.67 0.951409
Target:  5'- cGCGCCGAUAcagguuggccaugCGCGacgguaUGCAcACAgGCa -3'
miRNA:   3'- aCGCGGCUAUa------------GCGCa-----ACGU-UGUgCG- -5'
11289 5' -52.1 NC_003083.1 + 81846 0.66 0.964486
Target:  5'- uUGCgGCCGAUGUugaauauuauucUGCGUgcccggccagUGCcaGAUACGCg -3'
miRNA:   3'- -ACG-CGGCUAUA------------GCGCA----------ACG--UUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 81265 0.71 0.82849
Target:  5'- gGCGU--GUAaCGCGUUGCAguuuucgcACACGCg -3'
miRNA:   3'- aCGCGgcUAUaGCGCAACGU--------UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 79966 0.71 0.810568
Target:  5'- cGCGaCCGucaAUCGCGUcagucUGCAAUAUGUc -3'
miRNA:   3'- aCGC-GGCua-UAGCGCA-----ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 75070 0.7 0.853896
Target:  5'- aGCGUCGuUAaCGCGUuugacaaauauuUGCAuuuGCACGCu -3'
miRNA:   3'- aCGCGGCuAUaGCGCA------------ACGU---UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 74190 0.69 0.891791
Target:  5'- cGCgGCCGuuugCGCGUuguuuauauugUGCAACAUGUc -3'
miRNA:   3'- aCG-CGGCuauaGCGCA-----------ACGUUGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.