Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11289 | 5' | -52.1 | NC_003083.1 | + | 73761 | 1.14 | 0.002651 |
Target: 5'- aUGCGCCGAUAUCGCGUUGCAACACGCa -3' miRNA: 3'- -ACGCGGCUAUAGCGCAACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 13220 | 0.8 | 0.338567 |
Target: 5'- cGCGaCGAUuugaaaUGCGUUGCAACGCGCg -3' miRNA: 3'- aCGCgGCUAua----GCGCAACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 23217 | 0.77 | 0.501819 |
Target: 5'- --aGCCGcuUGUCGCGUUagacGCGGCGCGCa -3' miRNA: 3'- acgCGGCu-AUAGCGCAA----CGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 30395 | 0.75 | 0.605964 |
Target: 5'- cGCGgCGGUGUCGUgcugugccaacGUUGCAACGCa- -3' miRNA: 3'- aCGCgGCUAUAGCG-----------CAACGUUGUGcg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 92376 | 0.74 | 0.627287 |
Target: 5'- uUGUGUaCGGUGUCGUG-UGCAGCGCaGCu -3' miRNA: 3'- -ACGCG-GCUAUAGCGCaACGUUGUG-CG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 113661 | 0.74 | 0.648627 |
Target: 5'- cGUGCUGcgcgCGCGUUGUggaAGCGCGCa -3' miRNA: 3'- aCGCGGCuauaGCGCAACG---UUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 29025 | 0.73 | 0.680505 |
Target: 5'- cGCGCUuu--UCGCGUUGCAACAUcCa -3' miRNA: 3'- aCGCGGcuauAGCGCAACGUUGUGcG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 44092 | 0.73 | 0.695264 |
Target: 5'- aGCGCgauauuuguaguauaCGuuuuUGUaCGCGUUGCGACAUGCu -3' miRNA: 3'- aCGCG---------------GCu---AUA-GCGCAACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 51444 | 0.73 | 0.701557 |
Target: 5'- cGCGCaacccguuGUGUCGCGUguuugGCGugACGCu -3' miRNA: 3'- aCGCGgc------UAUAGCGCAa----CGUugUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 18845 | 0.72 | 0.752892 |
Target: 5'- cGCGUCGAcauugacGUCGCGagauccGCGAUACGCa -3' miRNA: 3'- aCGCGGCUa------UAGCGCaa----CGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 112477 | 0.72 | 0.77269 |
Target: 5'- gGUGUCGAUcgCGCGUUaCAGCAaaaccCGCg -3' miRNA: 3'- aCGCGGCUAuaGCGCAAcGUUGU-----GCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 58830 | 0.71 | 0.782389 |
Target: 5'- gGCGCgCGcGUAUCGCacggGUUGauCGGCACGCa -3' miRNA: 3'- aCGCG-GC-UAUAGCG----CAAC--GUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 30641 | 0.71 | 0.791942 |
Target: 5'- aUGCGcCCGAUGUCGuCGUaGUuuaACGCu -3' miRNA: 3'- -ACGC-GGCUAUAGC-GCAaCGuugUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 42306 | 0.71 | 0.791942 |
Target: 5'- cUGUGCaaCGAUAcuuuggaCGCGaugUGCAGCACGCu -3' miRNA: 3'- -ACGCG--GCUAUa------GCGCa--ACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 28006 | 0.71 | 0.801338 |
Target: 5'- ---uCCGGUGUCGCG-UGCGugACGUg -3' miRNA: 3'- acgcGGCUAUAGCGCaACGUugUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 79966 | 0.71 | 0.810568 |
Target: 5'- cGCGaCCGucaAUCGCGUcagucUGCAAUAUGUc -3' miRNA: 3'- aCGC-GGCua-UAGCGCA-----ACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 24859 | 0.71 | 0.810568 |
Target: 5'- uUG-GCCGGc--CGCGUUGCAACACu- -3' miRNA: 3'- -ACgCGGCUauaGCGCAACGUUGUGcg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 69527 | 0.71 | 0.819621 |
Target: 5'- aUGUGUCGGUAUUuggGCGUUGUAAUGCa- -3' miRNA: 3'- -ACGCGGCUAUAG---CGCAACGUUGUGcg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 81265 | 0.71 | 0.82849 |
Target: 5'- gGCGU--GUAaCGCGUUGCAguuuucgcACACGCg -3' miRNA: 3'- aCGCGgcUAUaGCGCAACGU--------UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 19696 | 0.71 | 0.82849 |
Target: 5'- -uCGCCaAUGUCGCGUUaaGUAACAUGUu -3' miRNA: 3'- acGCGGcUAUAGCGCAA--CGUUGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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