miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11289 5' -52.1 NC_003083.1 + 74190 0.69 0.891791
Target:  5'- cGCgGCCGuuugCGCGUuguuuauauugUGCAACAUGUc -3'
miRNA:   3'- aCG-CGGCuauaGCGCA-----------ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 81265 0.71 0.82849
Target:  5'- gGCGU--GUAaCGCGUUGCAguuuucgcACACGCg -3'
miRNA:   3'- aCGCGgcUAUaGCGCAACGU--------UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 75070 0.7 0.853896
Target:  5'- aGCGUCGuUAaCGCGUuugacaaauauuUGCAuuuGCACGCu -3'
miRNA:   3'- aCGCGGCuAUaGCGCA------------ACGU---UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 31530 0.7 0.861938
Target:  5'- uUGCGCgGGUAUC-CGUUGCGcCAaauUGCu -3'
miRNA:   3'- -ACGCGgCUAUAGcGCAACGUuGU---GCG- -5'
11289 5' -52.1 NC_003083.1 + 102139 0.7 0.861938
Target:  5'- gGCGCCGugcgCGCGUUGUAcguuAUggGCg -3'
miRNA:   3'- aCGCGGCuauaGCGCAACGU----UGugCG- -5'
11289 5' -52.1 NC_003083.1 + 88090 0.7 0.861938
Target:  5'- cGCGCCGGUcguuacccUCGCG--GCAcCGCGCc -3'
miRNA:   3'- aCGCGGCUAu-------AGCGCaaCGUuGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 56388 0.69 0.87734
Target:  5'- cGUGCCGA-GUgGCcaaUUGCGACAUGUa -3'
miRNA:   3'- aCGCGGCUaUAgCGc--AACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 58681 0.69 0.87734
Target:  5'- cGUGCCGAUcaaCcCG-UGCGAUACGCg -3'
miRNA:   3'- aCGCGGCUAua-GcGCaACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 43947 0.69 0.884687
Target:  5'- cUGCGCCGcaaa-GCGUgUGCGGCACu- -3'
miRNA:   3'- -ACGCGGCuauagCGCA-ACGUUGUGcg -5'
11289 5' -52.1 NC_003083.1 + 19696 0.71 0.82849
Target:  5'- -uCGCCaAUGUCGCGUUaaGUAACAUGUu -3'
miRNA:   3'- acGCGGcUAUAGCGCAA--CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 69527 0.71 0.819621
Target:  5'- aUGUGUCGGUAUUuggGCGUUGUAAUGCa- -3'
miRNA:   3'- -ACGCGGCUAUAG---CGCAACGUUGUGcg -5'
11289 5' -52.1 NC_003083.1 + 28006 0.71 0.801338
Target:  5'- ---uCCGGUGUCGCG-UGCGugACGUg -3'
miRNA:   3'- acgcGGCUAUAGCGCaACGUugUGCG- -5'
11289 5' -52.1 NC_003083.1 + 23217 0.77 0.501819
Target:  5'- --aGCCGcuUGUCGCGUUagacGCGGCGCGCa -3'
miRNA:   3'- acgCGGCu-AUAGCGCAA----CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 30395 0.75 0.605964
Target:  5'- cGCGgCGGUGUCGUgcugugccaacGUUGCAACGCa- -3'
miRNA:   3'- aCGCgGCUAUAGCG-----------CAACGUUGUGcg -5'
11289 5' -52.1 NC_003083.1 + 92376 0.74 0.627287
Target:  5'- uUGUGUaCGGUGUCGUG-UGCAGCGCaGCu -3'
miRNA:   3'- -ACGCG-GCUAUAGCGCaACGUUGUG-CG- -5'
11289 5' -52.1 NC_003083.1 + 113661 0.74 0.648627
Target:  5'- cGUGCUGcgcgCGCGUUGUggaAGCGCGCa -3'
miRNA:   3'- aCGCGGCuauaGCGCAACG---UUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 44092 0.73 0.695264
Target:  5'- aGCGCgauauuuguaguauaCGuuuuUGUaCGCGUUGCGACAUGCu -3'
miRNA:   3'- aCGCG---------------GCu---AUA-GCGCAACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 51444 0.73 0.701557
Target:  5'- cGCGCaacccguuGUGUCGCGUguuugGCGugACGCu -3'
miRNA:   3'- aCGCGgc------UAUAGCGCAa----CGUugUGCG- -5'
11289 5' -52.1 NC_003083.1 + 30641 0.71 0.791942
Target:  5'- aUGCGcCCGAUGUCGuCGUaGUuuaACGCu -3'
miRNA:   3'- -ACGC-GGCUAUAGC-GCAaCGuugUGCG- -5'
11289 5' -52.1 NC_003083.1 + 42306 0.71 0.791942
Target:  5'- cUGUGCaaCGAUAcuuuggaCGCGaugUGCAGCACGCu -3'
miRNA:   3'- -ACGCG--GCUAUa------GCGCa--ACGUUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.