miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11289 5' -52.1 NC_003083.1 + 1618 0.66 0.973783
Target:  5'- aUGUGCCGcacauUAUUgGCGccGUGGCGCGCu -3'
miRNA:   3'- -ACGCGGCu----AUAG-CGCaaCGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 3116 0.67 0.948806
Target:  5'- gUGCGCCGAUuugguuuuguagAUCGCaaugcguuuGUaGCAGCcUGCa -3'
miRNA:   3'- -ACGCGGCUA------------UAGCG---------CAaCGUUGuGCG- -5'
11289 5' -52.1 NC_003083.1 + 3524 0.67 0.950551
Target:  5'- gGCGuuGA---UGCGUUGUAuuuccauaaaucguuGCACGCc -3'
miRNA:   3'- aCGCggCUauaGCGCAACGU---------------UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 9271 0.66 0.973783
Target:  5'- gUGCGUCag---CGCGUUGCAaAUAUGUg -3'
miRNA:   3'- -ACGCGGcuauaGCGCAACGU-UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 9326 0.67 0.939468
Target:  5'- aGCGCCGAaacgAUUGCGcgcGCGAC-CGg -3'
miRNA:   3'- aCGCGGCUa---UAGCGCaa-CGUUGuGCg -5'
11289 5' -52.1 NC_003083.1 + 13220 0.8 0.338567
Target:  5'- cGCGaCGAUuugaaaUGCGUUGCAACGCGCg -3'
miRNA:   3'- aCGCgGCUAua----GCGCAACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 15243 0.67 0.948806
Target:  5'- uUGUG-CGAcauUCGCGUUGCGGauaacaACGCu -3'
miRNA:   3'- -ACGCgGCUau-AGCGCAACGUUg-----UGCG- -5'
11289 5' -52.1 NC_003083.1 + 18845 0.72 0.752892
Target:  5'- cGCGUCGAcauugacGUCGCGagauccGCGAUACGCa -3'
miRNA:   3'- aCGCGGCUa------UAGCGCaa----CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 19501 0.7 0.843116
Target:  5'- aUGCgGCCGucgcggaaacugaCGCGUUGCAACAUGg -3'
miRNA:   3'- -ACG-CGGCuaua---------GCGCAACGUUGUGCg -5'
11289 5' -52.1 NC_003083.1 + 19696 0.71 0.82849
Target:  5'- -uCGCCaAUGUCGCGUUaaGUAACAUGUu -3'
miRNA:   3'- acGCGGcUAUAGCGCAA--CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 21113 0.68 0.9291
Target:  5'- cUGUGCUaag--CGUGUUGCAcguCACGCg -3'
miRNA:   3'- -ACGCGGcuauaGCGCAACGUu--GUGCG- -5'
11289 5' -52.1 NC_003083.1 + 22408 0.68 0.923527
Target:  5'- cGUGCgCGuaGUCGUGUUGCuuaauaGCGCg -3'
miRNA:   3'- aCGCG-GCuaUAGCGCAACGuug---UGCG- -5'
11289 5' -52.1 NC_003083.1 + 23217 0.77 0.501819
Target:  5'- --aGCCGcuUGUCGCGUUagacGCGGCGCGCa -3'
miRNA:   3'- acgCGGCu-AUAGCGCAA----CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 24355 0.69 0.891791
Target:  5'- gUGCGCCGAUGUguuucCGCacUGUGACAcCGUg -3'
miRNA:   3'- -ACGCGGCUAUA-----GCGcaACGUUGU-GCG- -5'
11289 5' -52.1 NC_003083.1 + 24509 0.67 0.957134
Target:  5'- gGCGCUaAUucGUCGCGUUGacgAAC-CGCa -3'
miRNA:   3'- aCGCGGcUA--UAGCGCAACg--UUGuGCG- -5'
11289 5' -52.1 NC_003083.1 + 24859 0.71 0.810568
Target:  5'- uUG-GCCGGc--CGCGUUGCAACACu- -3'
miRNA:   3'- -ACgCGGCUauaGCGCAACGUUGUGcg -5'
11289 5' -52.1 NC_003083.1 + 28006 0.71 0.801338
Target:  5'- ---uCCGGUGUCGCG-UGCGugACGUg -3'
miRNA:   3'- acgcGGCUAUAGCGCaACGUugUGCG- -5'
11289 5' -52.1 NC_003083.1 + 28248 0.66 0.960929
Target:  5'- gUGCaGCUGc---CGCGacUUGUAACGCGCg -3'
miRNA:   3'- -ACG-CGGCuauaGCGC--AACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 28516 0.66 0.972943
Target:  5'- aGCGgCGGUGUCGUcugcuaaacacaacGUggccGCGuccGCGCGCg -3'
miRNA:   3'- aCGCgGCUAUAGCG--------------CAa---CGU---UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 29025 0.73 0.680505
Target:  5'- cGCGCUuu--UCGCGUUGCAACAUcCa -3'
miRNA:   3'- aCGCGGcuauAGCGCAACGUUGUGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.