Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11289 | 5' | -52.1 | NC_003083.1 | + | 38067 | 0.66 | 0.970906 |
Target: 5'- gGUGCCGcggcacGUCGCGUguucuuCAACGCGg -3' miRNA: 3'- aCGCGGCua----UAGCGCAac----GUUGUGCg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 81846 | 0.66 | 0.964486 |
Target: 5'- uUGCgGCCGAUGUugaauauuauucUGCGUgcccggccagUGCcaGAUACGCg -3' miRNA: 3'- -ACG-CGGCUAUA------------GCGCA----------ACG--UUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 29211 | 0.66 | 0.967809 |
Target: 5'- cGCGUCaAUggcAUCGCGUUGUAuuagaugaaGCGCa -3' miRNA: 3'- aCGCGGcUA---UAGCGCAACGUug-------UGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 109496 | 0.66 | 0.970606 |
Target: 5'- cGCGCaGAcccgugaugUGUCGCGUgcgcuucgcuucUGCGgacuuacGCACGCu -3' miRNA: 3'- aCGCGgCU---------AUAGCGCA------------ACGU-------UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 94192 | 0.66 | 0.964486 |
Target: 5'- gGCGCCuucGUCGUGUuugGCGgGCGCGUc -3' miRNA: 3'- aCGCGGcuaUAGCGCAa--CGU-UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 35673 | 0.66 | 0.964486 |
Target: 5'- gGCGUacacGUCGCG-UGCAAaaaGCGCg -3' miRNA: 3'- aCGCGgcuaUAGCGCaACGUUg--UGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 9271 | 0.66 | 0.973783 |
Target: 5'- gUGCGUCag---CGCGUUGCAaAUAUGUg -3' miRNA: 3'- -ACGCGGcuauaGCGCAACGU-UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 67133 | 0.66 | 0.973783 |
Target: 5'- cGCGUCGGUAUUuuacaaCGUggGCcaaaAACACGCg -3' miRNA: 3'- aCGCGGCUAUAGc-----GCAa-CG----UUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 1618 | 0.66 | 0.973783 |
Target: 5'- aUGUGCCGcacauUAUUgGCGccGUGGCGCGCu -3' miRNA: 3'- -ACGCGGCu----AUAG-CGCaaCGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 96706 | 0.66 | 0.959816 |
Target: 5'- gGCGCCGGUcggggaAUCGCGcgaacuuaucgaaucGUuGCACGCc -3' miRNA: 3'- aCGCGGCUA------UAGCGCaa-------------CGuUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 99047 | 0.66 | 0.973783 |
Target: 5'- cGCGCUGcgcuugcuuUUGCuuuugGCAACGCGCa -3' miRNA: 3'- aCGCGGCuau------AGCGcaa--CGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 56916 | 0.66 | 0.960929 |
Target: 5'- gGCGCCGAca-CGCucgGCAAagACGCa -3' miRNA: 3'- aCGCGGCUauaGCGcaaCGUUg-UGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 71687 | 0.66 | 0.976448 |
Target: 5'- aUG-GCCGGc-UUGUGUUGaAACACGCa -3' miRNA: 3'- -ACgCGGCUauAGCGCAACgUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 42665 | 0.66 | 0.973783 |
Target: 5'- -aUGCCGuuggcguUCGCGUuaugGCAauuGCACGCc -3' miRNA: 3'- acGCGGCuau----AGCGCAa---CGU---UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 28248 | 0.66 | 0.960929 |
Target: 5'- gUGCaGCUGc---CGCGacUUGUAACGCGCg -3' miRNA: 3'- -ACG-CGGCuauaGCGC--AACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 28516 | 0.66 | 0.972943 |
Target: 5'- aGCGgCGGUGUCGUcugcuaaacacaacGUggccGCGuccGCGCGCg -3' miRNA: 3'- aCGCgGCUAUAGCG--------------CAa---CGU---UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 9326 | 0.67 | 0.939468 |
Target: 5'- aGCGCCGAaacgAUUGCGcgcGCGAC-CGg -3' miRNA: 3'- aCGCGGCUa---UAGCGCaa-CGUUGuGCg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 99752 | 0.67 | 0.939468 |
Target: 5'- cGCGCCGAuUAUCuGCacguUUGaauuGCGCGCg -3' miRNA: 3'- aCGCGGCU-AUAG-CGc---AACgu--UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 15243 | 0.67 | 0.948806 |
Target: 5'- uUGUG-CGAcauUCGCGUUGCGGauaacaACGCu -3' miRNA: 3'- -ACGCgGCUau-AGCGCAACGUUg-----UGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 84499 | 0.67 | 0.951409 |
Target: 5'- cGCGCCGAUAcagguuggccaugCGCGacgguaUGCAcACAgGCa -3' miRNA: 3'- aCGCGGCUAUa------------GCGCa-----ACGU-UGUgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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