miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11289 5' -52.1 NC_003083.1 + 73761 1.14 0.002651
Target:  5'- aUGCGCCGAUAUCGCGUUGCAACACGCa -3'
miRNA:   3'- -ACGCGGCUAUAGCGCAACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 99752 0.67 0.939468
Target:  5'- cGCGCCGAuUAUCuGCacguUUGaauuGCGCGCg -3'
miRNA:   3'- aCGCGGCU-AUAG-CGc---AACgu--UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 55982 0.67 0.944265
Target:  5'- cGUGCCGuauUAUCGUuuagGCAACcacgaACGCg -3'
miRNA:   3'- aCGCGGCu--AUAGCGcaa-CGUUG-----UGCG- -5'
11289 5' -52.1 NC_003083.1 + 28516 0.66 0.972943
Target:  5'- aGCGgCGGUGUCGUcugcuaaacacaacGUggccGCGuccGCGCGCg -3'
miRNA:   3'- aCGCgGCUAUAGCG--------------CAa---CGU---UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 58830 0.71 0.782389
Target:  5'- gGCGCgCGcGUAUCGCacggGUUGauCGGCACGCa -3'
miRNA:   3'- aCGCG-GC-UAUAGCG----CAAC--GUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 79966 0.71 0.810568
Target:  5'- cGCGaCCGucaAUCGCGUcagucUGCAAUAUGUc -3'
miRNA:   3'- aCGC-GGCua-UAGCGCA-----ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 58717 0.7 0.837164
Target:  5'- cGCGuuGggAUCGUGgcgcuaggcGCAACACGUu -3'
miRNA:   3'- aCGCggCuaUAGCGCaa-------CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 19501 0.7 0.843116
Target:  5'- aUGCgGCCGucgcggaaacugaCGCGUUGCAACAUGg -3'
miRNA:   3'- -ACG-CGGCuaua---------GCGCAACGUUGUGCg -5'
11289 5' -52.1 NC_003083.1 + 65973 0.7 0.869755
Target:  5'- cGCGCCGGUAauaaagucuUCGCaGUacuuCAACACGUu -3'
miRNA:   3'- aCGCGGCUAU---------AGCG-CAac--GUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 63251 0.68 0.934414
Target:  5'- aGUGCCGugugggcAUUGCGUguugaGUAGCGCGUu -3'
miRNA:   3'- aCGCGGCua-----UAGCGCAa----CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 44090 0.68 0.923527
Target:  5'- aGUGCCGcacaCGCuUUGCGGCGCaGCg -3'
miRNA:   3'- aCGCGGCuauaGCGcAACGUUGUG-CG- -5'
11289 5' -52.1 NC_003083.1 + 61517 0.7 0.861938
Target:  5'- aUGCGCCac--UUGUGUucgcaaaauuaUGCAACGCGCc -3'
miRNA:   3'- -ACGCGGcuauAGCGCA-----------ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 29025 0.73 0.680505
Target:  5'- cGCGCUuu--UCGCGUUGCAACAUcCa -3'
miRNA:   3'- aCGCGGcuauAGCGCAACGUUGUGcG- -5'
11289 5' -52.1 NC_003083.1 + 22408 0.68 0.923527
Target:  5'- cGUGCgCGuaGUCGUGUUGCuuaauaGCGCg -3'
miRNA:   3'- aCGCG-GCuaUAGCGCAACGuug---UGCG- -5'
11289 5' -52.1 NC_003083.1 + 18845 0.72 0.752892
Target:  5'- cGCGUCGAcauugacGUCGCGagauccGCGAUACGCa -3'
miRNA:   3'- aCGCGGCUa------UAGCGCaa----CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 73802 0.7 0.853896
Target:  5'- uUGCGCCcg---CGCccGUUGCAACAaCGCc -3'
miRNA:   3'- -ACGCGGcuauaGCG--CAACGUUGU-GCG- -5'
11289 5' -52.1 NC_003083.1 + 87340 0.68 0.9291
Target:  5'- aUGuCGCCGcUGUuaaugucggcgaCGCGUccgUGUGGCGCGCa -3'
miRNA:   3'- -AC-GCGGCuAUA------------GCGCA---ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 88189 0.67 0.944265
Target:  5'- gGCcCCGuc-UCGCGU--CAACACGCa -3'
miRNA:   3'- aCGcGGCuauAGCGCAacGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 112477 0.72 0.77269
Target:  5'- gGUGUCGAUcgCGCGUUaCAGCAaaaccCGCg -3'
miRNA:   3'- aCGCGGCUAuaGCGCAAcGUUGU-----GCG- -5'
11289 5' -52.1 NC_003083.1 + 24859 0.71 0.810568
Target:  5'- uUG-GCCGGc--CGCGUUGCAACACu- -3'
miRNA:   3'- -ACgCGGCUauaGCGCAACGUUGUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.