miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11289 5' -52.1 NC_003083.1 + 112477 0.72 0.77269
Target:  5'- gGUGUCGAUcgCGCGUUaCAGCAaaaccCGCg -3'
miRNA:   3'- aCGCGGCUAuaGCGCAAcGUUGU-----GCG- -5'
11289 5' -52.1 NC_003083.1 + 32315 0.67 0.957134
Target:  5'- aGCGCCGGcagugUGCGUUuCGGCcaGCGCc -3'
miRNA:   3'- aCGCGGCUaua--GCGCAAcGUUG--UGCG- -5'
11289 5' -52.1 NC_003083.1 + 99752 0.67 0.939468
Target:  5'- cGCGCCGAuUAUCuGCacguUUGaauuGCGCGCg -3'
miRNA:   3'- aCGCGGCU-AUAG-CGc---AACgu--UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 18845 0.72 0.752892
Target:  5'- cGCGUCGAcauugacGUCGCGagauccGCGAUACGCa -3'
miRNA:   3'- aCGCGGCUa------UAGCGCaa----CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 28516 0.66 0.972943
Target:  5'- aGCGgCGGUGUCGUcugcuaaacacaacGUggccGCGuccGCGCGCg -3'
miRNA:   3'- aCGCgGCUAUAGCG--------------CAa---CGU---UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 29025 0.73 0.680505
Target:  5'- cGCGCUuu--UCGCGUUGCAACAUcCa -3'
miRNA:   3'- aCGCGGcuauAGCGCAACGUUGUGcG- -5'
11289 5' -52.1 NC_003083.1 + 73761 1.14 0.002651
Target:  5'- aUGCGCCGAUAUCGCGUUGCAACACGCa -3'
miRNA:   3'- -ACGCGGCUAUAGCGCAACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 51444 0.73 0.701557
Target:  5'- cGCGCaacccguuGUGUCGCGUguuugGCGugACGCu -3'
miRNA:   3'- aCGCGgc------UAUAGCGCAa----CGUugUGCG- -5'
11289 5' -52.1 NC_003083.1 + 84499 0.67 0.951409
Target:  5'- cGCGCCGAUAcagguuggccaugCGCGacgguaUGCAcACAgGCa -3'
miRNA:   3'- aCGCGGCUAUa------------GCGCa-----ACGU-UGUgCG- -5'
11289 5' -52.1 NC_003083.1 + 15243 0.67 0.948806
Target:  5'- uUGUG-CGAcauUCGCGUUGCGGauaacaACGCu -3'
miRNA:   3'- -ACGCgGCUau-AGCGCAACGUUg-----UGCG- -5'
11289 5' -52.1 NC_003083.1 + 31530 0.7 0.861938
Target:  5'- uUGCGCgGGUAUC-CGUUGCGcCAaauUGCu -3'
miRNA:   3'- -ACGCGgCUAUAGcGCAACGUuGU---GCG- -5'
11289 5' -52.1 NC_003083.1 + 75070 0.7 0.853896
Target:  5'- aGCGUCGuUAaCGCGUuugacaaauauuUGCAuuuGCACGCu -3'
miRNA:   3'- aCGCGGCuAUaGCGCA------------ACGU---UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 81265 0.71 0.82849
Target:  5'- gGCGU--GUAaCGCGUUGCAguuuucgcACACGCg -3'
miRNA:   3'- aCGCGgcUAUaGCGCAACGU--------UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 19696 0.71 0.82849
Target:  5'- -uCGCCaAUGUCGCGUUaaGUAACAUGUu -3'
miRNA:   3'- acGCGGcUAUAGCGCAA--CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 44092 0.73 0.695264
Target:  5'- aGCGCgauauuuguaguauaCGuuuuUGUaCGCGUUGCGACAUGCu -3'
miRNA:   3'- aCGCG---------------GCu---AUA-GCGCAACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 43479 0.69 0.905252
Target:  5'- uUGCGUaacugAUCGCGcacggcuuugGCGGCACGCg -3'
miRNA:   3'- -ACGCGgcua-UAGCGCaa--------CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 21113 0.68 0.9291
Target:  5'- cUGUGCUaag--CGUGUUGCAcguCACGCg -3'
miRNA:   3'- -ACGCGGcuauaGCGCAACGUu--GUGCG- -5'
11289 5' -52.1 NC_003083.1 + 35041 0.68 0.934414
Target:  5'- cUGgGCaGAcg-CGCGUUGCGGCACa- -3'
miRNA:   3'- -ACgCGgCUauaGCGCAACGUUGUGcg -5'
11289 5' -52.1 NC_003083.1 + 9326 0.67 0.939468
Target:  5'- aGCGCCGAaacgAUUGCGcgcGCGAC-CGg -3'
miRNA:   3'- aCGCGGCUa---UAGCGCaa-CGUUGuGCg -5'
11289 5' -52.1 NC_003083.1 + 3116 0.67 0.948806
Target:  5'- gUGCGCCGAUuugguuuuguagAUCGCaaugcguuuGUaGCAGCcUGCa -3'
miRNA:   3'- -ACGCGGCUA------------UAGCG---------CAaCGUUGuGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.