Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11289 | 5' | -52.1 | NC_003083.1 | + | 112477 | 0.72 | 0.77269 |
Target: 5'- gGUGUCGAUcgCGCGUUaCAGCAaaaccCGCg -3' miRNA: 3'- aCGCGGCUAuaGCGCAAcGUUGU-----GCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 32315 | 0.67 | 0.957134 |
Target: 5'- aGCGCCGGcagugUGCGUUuCGGCcaGCGCc -3' miRNA: 3'- aCGCGGCUaua--GCGCAAcGUUG--UGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 99752 | 0.67 | 0.939468 |
Target: 5'- cGCGCCGAuUAUCuGCacguUUGaauuGCGCGCg -3' miRNA: 3'- aCGCGGCU-AUAG-CGc---AACgu--UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 18845 | 0.72 | 0.752892 |
Target: 5'- cGCGUCGAcauugacGUCGCGagauccGCGAUACGCa -3' miRNA: 3'- aCGCGGCUa------UAGCGCaa----CGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 28516 | 0.66 | 0.972943 |
Target: 5'- aGCGgCGGUGUCGUcugcuaaacacaacGUggccGCGuccGCGCGCg -3' miRNA: 3'- aCGCgGCUAUAGCG--------------CAa---CGU---UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 29025 | 0.73 | 0.680505 |
Target: 5'- cGCGCUuu--UCGCGUUGCAACAUcCa -3' miRNA: 3'- aCGCGGcuauAGCGCAACGUUGUGcG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 73761 | 1.14 | 0.002651 |
Target: 5'- aUGCGCCGAUAUCGCGUUGCAACACGCa -3' miRNA: 3'- -ACGCGGCUAUAGCGCAACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 51444 | 0.73 | 0.701557 |
Target: 5'- cGCGCaacccguuGUGUCGCGUguuugGCGugACGCu -3' miRNA: 3'- aCGCGgc------UAUAGCGCAa----CGUugUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 84499 | 0.67 | 0.951409 |
Target: 5'- cGCGCCGAUAcagguuggccaugCGCGacgguaUGCAcACAgGCa -3' miRNA: 3'- aCGCGGCUAUa------------GCGCa-----ACGU-UGUgCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 15243 | 0.67 | 0.948806 |
Target: 5'- uUGUG-CGAcauUCGCGUUGCGGauaacaACGCu -3' miRNA: 3'- -ACGCgGCUau-AGCGCAACGUUg-----UGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 31530 | 0.7 | 0.861938 |
Target: 5'- uUGCGCgGGUAUC-CGUUGCGcCAaauUGCu -3' miRNA: 3'- -ACGCGgCUAUAGcGCAACGUuGU---GCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 75070 | 0.7 | 0.853896 |
Target: 5'- aGCGUCGuUAaCGCGUuugacaaauauuUGCAuuuGCACGCu -3' miRNA: 3'- aCGCGGCuAUaGCGCA------------ACGU---UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 81265 | 0.71 | 0.82849 |
Target: 5'- gGCGU--GUAaCGCGUUGCAguuuucgcACACGCg -3' miRNA: 3'- aCGCGgcUAUaGCGCAACGU--------UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 19696 | 0.71 | 0.82849 |
Target: 5'- -uCGCCaAUGUCGCGUUaaGUAACAUGUu -3' miRNA: 3'- acGCGGcUAUAGCGCAA--CGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 44092 | 0.73 | 0.695264 |
Target: 5'- aGCGCgauauuuguaguauaCGuuuuUGUaCGCGUUGCGACAUGCu -3' miRNA: 3'- aCGCG---------------GCu---AUA-GCGCAACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 43479 | 0.69 | 0.905252 |
Target: 5'- uUGCGUaacugAUCGCGcacggcuuugGCGGCACGCg -3' miRNA: 3'- -ACGCGgcua-UAGCGCaa--------CGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 21113 | 0.68 | 0.9291 |
Target: 5'- cUGUGCUaag--CGUGUUGCAcguCACGCg -3' miRNA: 3'- -ACGCGGcuauaGCGCAACGUu--GUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 35041 | 0.68 | 0.934414 |
Target: 5'- cUGgGCaGAcg-CGCGUUGCGGCACa- -3' miRNA: 3'- -ACgCGgCUauaGCGCAACGUUGUGcg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 9326 | 0.67 | 0.939468 |
Target: 5'- aGCGCCGAaacgAUUGCGcgcGCGAC-CGg -3' miRNA: 3'- aCGCGGCUa---UAGCGCaa-CGUUGuGCg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 3116 | 0.67 | 0.948806 |
Target: 5'- gUGCGCCGAUuugguuuuguagAUCGCaaugcguuuGUaGCAGCcUGCa -3' miRNA: 3'- -ACGCGGCUA------------UAGCG---------CAaCGUUGuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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