miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11289 5' -52.1 NC_003083.1 + 58717 0.7 0.837164
Target:  5'- cGCGuuGggAUCGUGgcgcuaggcGCAACACGUu -3'
miRNA:   3'- aCGCggCuaUAGCGCaa-------CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 19501 0.7 0.843116
Target:  5'- aUGCgGCCGucgcggaaacugaCGCGUUGCAACAUGg -3'
miRNA:   3'- -ACG-CGGCuaua---------GCGCAACGUUGUGCg -5'
11289 5' -52.1 NC_003083.1 + 73802 0.7 0.853896
Target:  5'- uUGCGCCcg---CGCccGUUGCAACAaCGCc -3'
miRNA:   3'- -ACGCGGcuauaGCG--CAACGUUGU-GCG- -5'
11289 5' -52.1 NC_003083.1 + 75070 0.7 0.853896
Target:  5'- aGCGUCGuUAaCGCGUuugacaaauauuUGCAuuuGCACGCu -3'
miRNA:   3'- aCGCGGCuAUaGCGCA------------ACGU---UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 31530 0.7 0.861938
Target:  5'- uUGCGCgGGUAUC-CGUUGCGcCAaauUGCu -3'
miRNA:   3'- -ACGCGgCUAUAGcGCAACGUuGU---GCG- -5'
11289 5' -52.1 NC_003083.1 + 102139 0.7 0.861938
Target:  5'- gGCGCCGugcgCGCGUUGUAcguuAUggGCg -3'
miRNA:   3'- aCGCGGCuauaGCGCAACGU----UGugCG- -5'
11289 5' -52.1 NC_003083.1 + 88090 0.7 0.861938
Target:  5'- cGCGCCGGUcguuacccUCGCG--GCAcCGCGCc -3'
miRNA:   3'- aCGCGGCUAu-------AGCGCaaCGUuGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 61517 0.7 0.861938
Target:  5'- aUGCGCCac--UUGUGUucgcaaaauuaUGCAACGCGCc -3'
miRNA:   3'- -ACGCGGcuauAGCGCA-----------ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 65973 0.7 0.869755
Target:  5'- cGCGCCGGUAauaaagucuUCGCaGUacuuCAACACGUu -3'
miRNA:   3'- aCGCGGCUAU---------AGCG-CAac--GUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 56388 0.69 0.87734
Target:  5'- cGUGCCGA-GUgGCcaaUUGCGACAUGUa -3'
miRNA:   3'- aCGCGGCUaUAgCGc--AACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 58681 0.69 0.87734
Target:  5'- cGUGCCGAUcaaCcCG-UGCGAUACGCg -3'
miRNA:   3'- aCGCGGCUAua-GcGCaACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 43947 0.69 0.884687
Target:  5'- cUGCGCCGcaaa-GCGUgUGCGGCACu- -3'
miRNA:   3'- -ACGCGGCuauagCGCA-ACGUUGUGcg -5'
11289 5' -52.1 NC_003083.1 + 24355 0.69 0.891791
Target:  5'- gUGCGCCGAUGUguuucCGCacUGUGACAcCGUg -3'
miRNA:   3'- -ACGCGGCUAUA-----GCGcaACGUUGU-GCG- -5'
11289 5' -52.1 NC_003083.1 + 74190 0.69 0.891791
Target:  5'- cGCgGCCGuuugCGCGUuguuuauauugUGCAACAUGUc -3'
miRNA:   3'- aCG-CGGCuauaGCGCA-----------ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 59109 0.69 0.898647
Target:  5'- --aGCCGAUAUUG----GCGACACGCa -3'
miRNA:   3'- acgCGGCUAUAGCgcaaCGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 43479 0.69 0.905252
Target:  5'- uUGCGUaacugAUCGCGcacggcuuugGCGGCACGCg -3'
miRNA:   3'- -ACGCGgcua-UAGCGCaa--------CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 89894 0.69 0.905252
Target:  5'- aGCuGCCGG-AUCuGUaUUGCAACGCGUg -3'
miRNA:   3'- aCG-CGGCUaUAG-CGcAACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 22408 0.68 0.923527
Target:  5'- cGUGCgCGuaGUCGUGUUGCuuaauaGCGCg -3'
miRNA:   3'- aCGCG-GCuaUAGCGCAACGuug---UGCG- -5'
11289 5' -52.1 NC_003083.1 + 44090 0.68 0.923527
Target:  5'- aGUGCCGcacaCGCuUUGCGGCGCaGCg -3'
miRNA:   3'- aCGCGGCuauaGCGcAACGUUGUG-CG- -5'
11289 5' -52.1 NC_003083.1 + 21113 0.68 0.9291
Target:  5'- cUGUGCUaag--CGUGUUGCAcguCACGCg -3'
miRNA:   3'- -ACGCGGcuauaGCGCAACGUu--GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.