miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11289 5' -52.1 NC_003083.1 + 62937 0.67 0.953094
Target:  5'- aUGUGCCGugcgagCGCGUUGa---ACGCc -3'
miRNA:   3'- -ACGCGGCuaua--GCGCAACguugUGCG- -5'
11289 5' -52.1 NC_003083.1 + 84499 0.67 0.951409
Target:  5'- cGCGCCGAUAcagguuggccaugCGCGacgguaUGCAcACAgGCa -3'
miRNA:   3'- aCGCGGCUAUa------------GCGCa-----ACGU-UGUgCG- -5'
11289 5' -52.1 NC_003083.1 + 3524 0.67 0.950551
Target:  5'- gGCGuuGA---UGCGUUGUAuuuccauaaaucguuGCACGCc -3'
miRNA:   3'- aCGCggCUauaGCGCAACGU---------------UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 3116 0.67 0.948806
Target:  5'- gUGCGCCGAUuugguuuuguagAUCGCaaugcguuuGUaGCAGCcUGCa -3'
miRNA:   3'- -ACGCGGCUA------------UAGCG---------CAaCGUUGuGCG- -5'
11289 5' -52.1 NC_003083.1 + 15243 0.67 0.948806
Target:  5'- uUGUG-CGAcauUCGCGUUGCGGauaacaACGCu -3'
miRNA:   3'- -ACGCgGCUau-AGCGCAACGUUg-----UGCG- -5'
11289 5' -52.1 NC_003083.1 + 88189 0.67 0.944265
Target:  5'- gGCcCCGuc-UCGCGU--CAACACGCa -3'
miRNA:   3'- aCGcGGCuauAGCGCAacGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 55982 0.67 0.944265
Target:  5'- cGUGCCGuauUAUCGUuuagGCAACcacgaACGCg -3'
miRNA:   3'- aCGCGGCu--AUAGCGcaa-CGUUG-----UGCG- -5'
11289 5' -52.1 NC_003083.1 + 9326 0.67 0.939468
Target:  5'- aGCGCCGAaacgAUUGCGcgcGCGAC-CGg -3'
miRNA:   3'- aCGCGGCUa---UAGCGCaa-CGUUGuGCg -5'
11289 5' -52.1 NC_003083.1 + 99752 0.67 0.939468
Target:  5'- cGCGCCGAuUAUCuGCacguUUGaauuGCGCGCg -3'
miRNA:   3'- aCGCGGCU-AUAG-CGc---AACgu--UGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 63251 0.68 0.934414
Target:  5'- aGUGCCGugugggcAUUGCGUguugaGUAGCGCGUu -3'
miRNA:   3'- aCGCGGCua-----UAGCGCAa----CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 35041 0.68 0.934414
Target:  5'- cUGgGCaGAcg-CGCGUUGCGGCACa- -3'
miRNA:   3'- -ACgCGgCUauaGCGCAACGUUGUGcg -5'
11289 5' -52.1 NC_003083.1 + 21113 0.68 0.9291
Target:  5'- cUGUGCUaag--CGUGUUGCAcguCACGCg -3'
miRNA:   3'- -ACGCGGcuauaGCGCAACGUu--GUGCG- -5'
11289 5' -52.1 NC_003083.1 + 87340 0.68 0.9291
Target:  5'- aUGuCGCCGcUGUuaaugucggcgaCGCGUccgUGUGGCGCGCa -3'
miRNA:   3'- -AC-GCGGCuAUA------------GCGCA---ACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 22408 0.68 0.923527
Target:  5'- cGUGCgCGuaGUCGUGUUGCuuaauaGCGCg -3'
miRNA:   3'- aCGCG-GCuaUAGCGCAACGuug---UGCG- -5'
11289 5' -52.1 NC_003083.1 + 44090 0.68 0.923527
Target:  5'- aGUGCCGcacaCGCuUUGCGGCGCaGCg -3'
miRNA:   3'- aCGCGGCuauaGCGcAACGUUGUG-CG- -5'
11289 5' -52.1 NC_003083.1 + 89894 0.69 0.905252
Target:  5'- aGCuGCCGG-AUCuGUaUUGCAACGCGUg -3'
miRNA:   3'- aCG-CGGCUaUAG-CGcAACGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 43479 0.69 0.905252
Target:  5'- uUGCGUaacugAUCGCGcacggcuuugGCGGCACGCg -3'
miRNA:   3'- -ACGCGgcua-UAGCGCaa--------CGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 59109 0.69 0.898647
Target:  5'- --aGCCGAUAUUG----GCGACACGCa -3'
miRNA:   3'- acgCGGCUAUAGCgcaaCGUUGUGCG- -5'
11289 5' -52.1 NC_003083.1 + 24355 0.69 0.891791
Target:  5'- gUGCGCCGAUGUguuucCGCacUGUGACAcCGUg -3'
miRNA:   3'- -ACGCGGCUAUA-----GCGcaACGUUGU-GCG- -5'
11289 5' -52.1 NC_003083.1 + 74190 0.69 0.891791
Target:  5'- cGCgGCCGuuugCGCGUuguuuauauugUGCAACAUGUc -3'
miRNA:   3'- aCG-CGGCuauaGCGCA-----------ACGUUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.