Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11289 | 5' | -52.1 | NC_003083.1 | + | 43947 | 0.69 | 0.884687 |
Target: 5'- cUGCGCCGcaaa-GCGUgUGCGGCACu- -3' miRNA: 3'- -ACGCGGCuauagCGCA-ACGUUGUGcg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 58681 | 0.69 | 0.87734 |
Target: 5'- cGUGCCGAUcaaCcCG-UGCGAUACGCg -3' miRNA: 3'- aCGCGGCUAua-GcGCaACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 56388 | 0.69 | 0.87734 |
Target: 5'- cGUGCCGA-GUgGCcaaUUGCGACAUGUa -3' miRNA: 3'- aCGCGGCUaUAgCGc--AACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 65973 | 0.7 | 0.869755 |
Target: 5'- cGCGCCGGUAauaaagucuUCGCaGUacuuCAACACGUu -3' miRNA: 3'- aCGCGGCUAU---------AGCG-CAac--GUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 61517 | 0.7 | 0.861938 |
Target: 5'- aUGCGCCac--UUGUGUucgcaaaauuaUGCAACGCGCc -3' miRNA: 3'- -ACGCGGcuauAGCGCA-----------ACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 102139 | 0.7 | 0.861938 |
Target: 5'- gGCGCCGugcgCGCGUUGUAcguuAUggGCg -3' miRNA: 3'- aCGCGGCuauaGCGCAACGU----UGugCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 88090 | 0.7 | 0.861938 |
Target: 5'- cGCGCCGGUcguuacccUCGCG--GCAcCGCGCc -3' miRNA: 3'- aCGCGGCUAu-------AGCGCaaCGUuGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 31530 | 0.7 | 0.861938 |
Target: 5'- uUGCGCgGGUAUC-CGUUGCGcCAaauUGCu -3' miRNA: 3'- -ACGCGgCUAUAGcGCAACGUuGU---GCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 75070 | 0.7 | 0.853896 |
Target: 5'- aGCGUCGuUAaCGCGUuugacaaauauuUGCAuuuGCACGCu -3' miRNA: 3'- aCGCGGCuAUaGCGCA------------ACGU---UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 73802 | 0.7 | 0.853896 |
Target: 5'- uUGCGCCcg---CGCccGUUGCAACAaCGCc -3' miRNA: 3'- -ACGCGGcuauaGCG--CAACGUUGU-GCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 19501 | 0.7 | 0.843116 |
Target: 5'- aUGCgGCCGucgcggaaacugaCGCGUUGCAACAUGg -3' miRNA: 3'- -ACG-CGGCuaua---------GCGCAACGUUGUGCg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 58717 | 0.7 | 0.837164 |
Target: 5'- cGCGuuGggAUCGUGgcgcuaggcGCAACACGUu -3' miRNA: 3'- aCGCggCuaUAGCGCaa-------CGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 81265 | 0.71 | 0.82849 |
Target: 5'- gGCGU--GUAaCGCGUUGCAguuuucgcACACGCg -3' miRNA: 3'- aCGCGgcUAUaGCGCAACGU--------UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 19696 | 0.71 | 0.82849 |
Target: 5'- -uCGCCaAUGUCGCGUUaaGUAACAUGUu -3' miRNA: 3'- acGCGGcUAUAGCGCAA--CGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 69527 | 0.71 | 0.819621 |
Target: 5'- aUGUGUCGGUAUUuggGCGUUGUAAUGCa- -3' miRNA: 3'- -ACGCGGCUAUAG---CGCAACGUUGUGcg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 79966 | 0.71 | 0.810568 |
Target: 5'- cGCGaCCGucaAUCGCGUcagucUGCAAUAUGUc -3' miRNA: 3'- aCGC-GGCua-UAGCGCA-----ACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 24859 | 0.71 | 0.810568 |
Target: 5'- uUG-GCCGGc--CGCGUUGCAACACu- -3' miRNA: 3'- -ACgCGGCUauaGCGCAACGUUGUGcg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 28006 | 0.71 | 0.801338 |
Target: 5'- ---uCCGGUGUCGCG-UGCGugACGUg -3' miRNA: 3'- acgcGGCUAUAGCGCaACGUugUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 42306 | 0.71 | 0.791942 |
Target: 5'- cUGUGCaaCGAUAcuuuggaCGCGaugUGCAGCACGCu -3' miRNA: 3'- -ACGCG--GCUAUa------GCGCa--ACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 30641 | 0.71 | 0.791942 |
Target: 5'- aUGCGcCCGAUGUCGuCGUaGUuuaACGCu -3' miRNA: 3'- -ACGC-GGCUAUAGC-GCAaCGuugUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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