Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11289 | 5' | -52.1 | NC_003083.1 | + | 21113 | 0.68 | 0.9291 |
Target: 5'- cUGUGCUaag--CGUGUUGCAcguCACGCg -3' miRNA: 3'- -ACGCGGcuauaGCGCAACGUu--GUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 35041 | 0.68 | 0.934414 |
Target: 5'- cUGgGCaGAcg-CGCGUUGCGGCACa- -3' miRNA: 3'- -ACgCGgCUauaGCGCAACGUUGUGcg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 63251 | 0.68 | 0.934414 |
Target: 5'- aGUGCCGugugggcAUUGCGUguugaGUAGCGCGUu -3' miRNA: 3'- aCGCGGCua-----UAGCGCAa----CGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 99752 | 0.67 | 0.939468 |
Target: 5'- cGCGCCGAuUAUCuGCacguUUGaauuGCGCGCg -3' miRNA: 3'- aCGCGGCU-AUAG-CGc---AACgu--UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 9326 | 0.67 | 0.939468 |
Target: 5'- aGCGCCGAaacgAUUGCGcgcGCGAC-CGg -3' miRNA: 3'- aCGCGGCUa---UAGCGCaa-CGUUGuGCg -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 88189 | 0.67 | 0.944265 |
Target: 5'- gGCcCCGuc-UCGCGU--CAACACGCa -3' miRNA: 3'- aCGcGGCuauAGCGCAacGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 55982 | 0.67 | 0.944265 |
Target: 5'- cGUGCCGuauUAUCGUuuagGCAACcacgaACGCg -3' miRNA: 3'- aCGCGGCu--AUAGCGcaa-CGUUG-----UGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 3116 | 0.67 | 0.948806 |
Target: 5'- gUGCGCCGAUuugguuuuguagAUCGCaaugcguuuGUaGCAGCcUGCa -3' miRNA: 3'- -ACGCGGCUA------------UAGCG---------CAaCGUUGuGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 15243 | 0.67 | 0.948806 |
Target: 5'- uUGUG-CGAcauUCGCGUUGCGGauaacaACGCu -3' miRNA: 3'- -ACGCgGCUau-AGCGCAACGUUg-----UGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 3524 | 0.67 | 0.950551 |
Target: 5'- gGCGuuGA---UGCGUUGUAuuuccauaaaucguuGCACGCc -3' miRNA: 3'- aCGCggCUauaGCGCAACGU---------------UGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 84499 | 0.67 | 0.951409 |
Target: 5'- cGCGCCGAUAcagguuggccaugCGCGacgguaUGCAcACAgGCa -3' miRNA: 3'- aCGCGGCUAUa------------GCGCa-----ACGU-UGUgCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 62937 | 0.67 | 0.953094 |
Target: 5'- aUGUGCCGugcgagCGCGUUGa---ACGCc -3' miRNA: 3'- -ACGCGGCuaua--GCGCAACguugUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 30666 | 0.67 | 0.953094 |
Target: 5'- gGCaaaGCCGAcaaUGUgCGgGUUGUAGCgGCGCa -3' miRNA: 3'- aCG---CGGCU---AUA-GCgCAACGUUG-UGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 24509 | 0.67 | 0.957134 |
Target: 5'- gGCGCUaAUucGUCGCGUUGacgAAC-CGCa -3' miRNA: 3'- aCGCGGcUA--UAGCGCAACg--UUGuGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 32315 | 0.67 | 0.957134 |
Target: 5'- aGCGCCGGcagugUGCGUUuCGGCcaGCGCc -3' miRNA: 3'- aCGCGGCUaua--GCGCAAcGUUG--UGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 112817 | 0.67 | 0.957134 |
Target: 5'- uUGCGaCCGAUAacgCGCGaUUGUuaacAACAaCGCc -3' miRNA: 3'- -ACGC-GGCUAUa--GCGC-AACG----UUGU-GCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 96706 | 0.66 | 0.959816 |
Target: 5'- gGCGCCGGUcggggaAUCGCGcgaacuuaucgaaucGUuGCACGCc -3' miRNA: 3'- aCGCGGCUA------UAGCGCaa-------------CGuUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 56916 | 0.66 | 0.960929 |
Target: 5'- gGCGCCGAca-CGCucgGCAAagACGCa -3' miRNA: 3'- aCGCGGCUauaGCGcaaCGUUg-UGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 28248 | 0.66 | 0.960929 |
Target: 5'- gUGCaGCUGc---CGCGacUUGUAACGCGCg -3' miRNA: 3'- -ACG-CGGCuauaGCGC--AACGUUGUGCG- -5' |
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11289 | 5' | -52.1 | NC_003083.1 | + | 35673 | 0.66 | 0.964486 |
Target: 5'- gGCGUacacGUCGCG-UGCAAaaaGCGCg -3' miRNA: 3'- aCGCGgcuaUAGCGCaACGUUg--UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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