miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11290 3' -51.7 NC_003083.1 + 52786 0.66 0.981173
Target:  5'- cUUGCA-ACGCAACGAGca-CGCUGCg -3'
miRNA:   3'- cAGCGUgUGUGUUGCUUacaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 72910 0.66 0.978908
Target:  5'- -cCGCGCACGUAcCGAAgaa-GCCGCa -3'
miRNA:   3'- caGCGUGUGUGUuGCUUacagCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 11924 0.66 0.978908
Target:  5'- -gCGCuCAUcaACAACGggUacggcGUCGUCGCc -3'
miRNA:   3'- caGCGuGUG--UGUUGCuuA-----CAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 117768 0.66 0.978908
Target:  5'- -gCGCAUGCGCAuaaGCGuuGUGUaaUGUCGCa -3'
miRNA:   3'- caGCGUGUGUGU---UGCu-UACA--GCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 102425 0.66 0.976448
Target:  5'- -aCGUgACAUACAACG--UGUCGCC-Ca -3'
miRNA:   3'- caGCG-UGUGUGUUGCuuACAGCGGcG- -5'
11290 3' -51.7 NC_003083.1 + 92628 0.66 0.976448
Target:  5'- cGUUGCACACuCAaaauuuuuGCGAA-GUCGUgGUg -3'
miRNA:   3'- -CAGCGUGUGuGU--------UGCUUaCAGCGgCG- -5'
11290 3' -51.7 NC_003083.1 + 35209 0.66 0.97567
Target:  5'- --aGCACGgGCAACGcgauuucaauguuguUGUUGCUGCa -3'
miRNA:   3'- cagCGUGUgUGUUGCuu-------------ACAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 27706 0.66 0.973783
Target:  5'- -aCGCACGCugGcCGg----CGCCGCa -3'
miRNA:   3'- caGCGUGUGugUuGCuuacaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 40389 0.66 0.973783
Target:  5'- uUUGguUGCGCAACGGuuugugaguUGUCGCUGUu -3'
miRNA:   3'- cAGCguGUGUGUUGCUu--------ACAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 84600 0.66 0.973783
Target:  5'- -aCGCACGCGuCGGCGGuaaauUG-CGUCGUg -3'
miRNA:   3'- caGCGUGUGU-GUUGCUu----ACaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 38470 0.66 0.972083
Target:  5'- uUUGCGCGCAUGccugcuugauaauguACGcGUGUUGCgGCa -3'
miRNA:   3'- cAGCGUGUGUGU---------------UGCuUACAGCGgCG- -5'
11290 3' -51.7 NC_003083.1 + 100704 0.66 0.970906
Target:  5'- --aGCAUACGCcauGGCGcaGGUGgCGCCGCc -3'
miRNA:   3'- cagCGUGUGUG---UUGC--UUACaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 86885 0.66 0.970906
Target:  5'- -aCGCACGCggacuGCAACGcg---UGCCGCg -3'
miRNA:   3'- caGCGUGUG-----UGUUGCuuacaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 33559 0.66 0.970606
Target:  5'- uGUUGCACaugagcaagcuggACAUGACGuuaaacUCGCCGCa -3'
miRNA:   3'- -CAGCGUG-------------UGUGUUGCuuac--AGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 18697 0.67 0.967809
Target:  5'- aUCGCGgAucuCGCGACGucAAUGUCGaCGCg -3'
miRNA:   3'- cAGCGUgU---GUGUUGC--UUACAGCgGCG- -5'
11290 3' -51.7 NC_003083.1 + 28822 0.67 0.964486
Target:  5'- cUUGCACgccggccauuguGCACAAgcuUGAuuUGUUGCCGCa -3'
miRNA:   3'- cAGCGUG------------UGUGUU---GCUu-ACAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 24180 0.67 0.960929
Target:  5'- -aCGCAC-CGuCGGCGGAUGucccacUCGCCGa -3'
miRNA:   3'- caGCGUGuGU-GUUGCUUAC------AGCGGCg -5'
11290 3' -51.7 NC_003083.1 + 64552 0.67 0.960929
Target:  5'- cGUCGCcaACACcgucgcCAACGcc-GUCGCCGUc -3'
miRNA:   3'- -CAGCG--UGUGu-----GUUGCuuaCAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 28270 0.67 0.960929
Target:  5'- uUUGCACAU-CAGCG-GUGUCaacgugcagcuGCCGCg -3'
miRNA:   3'- cAGCGUGUGuGUUGCuUACAG-----------CGGCG- -5'
11290 3' -51.7 NC_003083.1 + 15680 0.67 0.957134
Target:  5'- uUCGC-CGCACAACGAu--UUGCCa- -3'
miRNA:   3'- cAGCGuGUGUGUUGCUuacAGCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.