miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11290 3' -51.7 NC_003083.1 + 52786 0.66 0.981173
Target:  5'- cUUGCA-ACGCAACGAGca-CGCUGCg -3'
miRNA:   3'- cAGCGUgUGUGUUGCUUacaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 58273 0.68 0.944265
Target:  5'- --gGUGCGCACGACGugcAUGUggUGCCGUc -3'
miRNA:   3'- cagCGUGUGUGUUGCu--UACA--GCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 28270 0.67 0.960929
Target:  5'- uUUGCACAU-CAGCG-GUGUCaacgugcagcuGCCGCg -3'
miRNA:   3'- cAGCGUGUGuGUUGCuUACAG-----------CGGCG- -5'
11290 3' -51.7 NC_003083.1 + 117768 0.66 0.978908
Target:  5'- -gCGCAUGCGCAuaaGCGuuGUGUaaUGUCGCa -3'
miRNA:   3'- caGCGUGUGUGU---UGCu-UACA--GCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 28340 0.68 0.928555
Target:  5'- cGUUGCACuAUACGACacaauuuuugccgGAagcGUGUCGCgCGCa -3'
miRNA:   3'- -CAGCGUG-UGUGUUG-------------CU---UACAGCG-GCG- -5'
11290 3' -51.7 NC_003083.1 + 40389 0.66 0.973783
Target:  5'- uUUGguUGCGCAACGGuuugugaguUGUCGCUGUu -3'
miRNA:   3'- cAGCguGUGUGUUGCUu--------ACAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 28504 0.68 0.939468
Target:  5'- --aGUuuaACGCAGCGGuuuagcaaaAUGUUGCCGCg -3'
miRNA:   3'- cagCGug-UGUGUUGCU---------UACAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 87176 0.7 0.853896
Target:  5'- gGUUGCGCGcCAC-ACGGAcgcGUCGCCGa -3'
miRNA:   3'- -CAGCGUGU-GUGuUGCUUa--CAGCGGCg -5'
11290 3' -51.7 NC_003083.1 + 60465 0.69 0.917693
Target:  5'- -gCGUACACggGCAACGGuguggGUUGCCGa -3'
miRNA:   3'- caGCGUGUG--UGUUGCUua---CAGCGGCg -5'
11290 3' -51.7 NC_003083.1 + 1825 0.69 0.911601
Target:  5'- cGUCGUcgguGCACGC--CGGc-GUCGCCGCa -3'
miRNA:   3'- -CAGCG----UGUGUGuuGCUuaCAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 71977 0.69 0.905252
Target:  5'- -cUGCACuuCAUAACGAccaGUGgaCGCCGCg -3'
miRNA:   3'- caGCGUGu-GUGUUGCU---UACa-GCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 38674 0.7 0.869755
Target:  5'- -cCGgGCACAUAAU--GUGUCcGCCGCg -3'
miRNA:   3'- caGCgUGUGUGUUGcuUACAG-CGGCG- -5'
11290 3' -51.7 NC_003083.1 + 33559 0.66 0.970606
Target:  5'- uGUUGCACaugagcaagcuggACAUGACGuuaaacUCGCCGCa -3'
miRNA:   3'- -CAGCGUG-------------UGUGUUGCuuac--AGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 86885 0.66 0.970906
Target:  5'- -aCGCACGCggacuGCAACGcg---UGCCGCg -3'
miRNA:   3'- caGCGUGUG-----UGUUGCuuacaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 100704 0.66 0.970906
Target:  5'- --aGCAUACGCcauGGCGcaGGUGgCGCCGCc -3'
miRNA:   3'- cagCGUGUGUG---UUGC--UUACaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 51429 0.7 0.868984
Target:  5'- -cCGCAUACACAAUGGcgcgcaacccguuGUGUCGCgUGUu -3'
miRNA:   3'- caGCGUGUGUGUUGCU-------------UACAGCG-GCG- -5'
11290 3' -51.7 NC_003083.1 + 102425 0.66 0.976448
Target:  5'- -aCGUgACAUACAACG--UGUCGCC-Ca -3'
miRNA:   3'- caGCG-UGUGUGUUGCuuACAGCGGcG- -5'
11290 3' -51.7 NC_003083.1 + 27706 0.66 0.973783
Target:  5'- -aCGCACGCugGcCGg----CGCCGCa -3'
miRNA:   3'- caGCGUGUGugUuGCuuacaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 35209 0.66 0.97567
Target:  5'- --aGCACGgGCAACGcgauuucaauguuguUGUUGCUGCa -3'
miRNA:   3'- cagCGUGUgUGUUGCuu-------------ACAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 84600 0.66 0.973783
Target:  5'- -aCGCACGCGuCGGCGGuaaauUG-CGUCGUg -3'
miRNA:   3'- caGCGUGUGU-GUUGCUu----ACaGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.