miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11290 3' -51.7 NC_003083.1 + 87357 1.12 0.003542
Target:  5'- cGUCGCACACACAACGAAUGUCGCCGCu -3'
miRNA:   3'- -CAGCGUGUGUGUUGCUUACAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 28270 0.67 0.960929
Target:  5'- uUUGCACAU-CAGCG-GUGUCaacgugcagcuGCCGCg -3'
miRNA:   3'- cAGCGUGUGuGUUGCuUACAG-----------CGGCG- -5'
11290 3' -51.7 NC_003083.1 + 64552 0.67 0.960929
Target:  5'- cGUCGCcaACACcgucgcCAACGcc-GUCGCCGUc -3'
miRNA:   3'- -CAGCG--UGUGu-----GUUGCuuaCAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 52786 0.66 0.981173
Target:  5'- cUUGCA-ACGCAACGAGca-CGCUGCg -3'
miRNA:   3'- cAGCGUgUGUGUUGCUUacaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 114398 0.71 0.810568
Target:  5'- cGUCGuCACcugacaACACGACGccGGUGcagCGCCGCa -3'
miRNA:   3'- -CAGC-GUG------UGUGUUGC--UUACa--GCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 4486 0.71 0.819621
Target:  5'- cGUCGUugACGCACAGCG-----CGCCGCu -3'
miRNA:   3'- -CAGCG--UGUGUGUUGCuuacaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 27039 0.69 0.905252
Target:  5'- aGUUGCGCACGgcauCGAUGAAUuGcUCGCUGUg -3'
miRNA:   3'- -CAGCGUGUGU----GUUGCUUA-C-AGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 62966 0.69 0.911601
Target:  5'- uUUGCGCACGCuagucACGc-UGUCaGCCGCc -3'
miRNA:   3'- cAGCGUGUGUGu----UGCuuACAG-CGGCG- -5'
11290 3' -51.7 NC_003083.1 + 28340 0.68 0.928555
Target:  5'- cGUUGCACuAUACGACacaauuuuugccgGAagcGUGUCGCgCGCa -3'
miRNA:   3'- -CAGCGUG-UGUGUUG-------------CU---UACAGCG-GCG- -5'
11290 3' -51.7 NC_003083.1 + 35320 0.67 0.953094
Target:  5'- -cCGCAUugGCAACGAGgUGaCG-CGCa -3'
miRNA:   3'- caGCGUGugUGUUGCUU-ACaGCgGCG- -5'
11290 3' -51.7 NC_003083.1 + 115440 0.68 0.944265
Target:  5'- -aCGUuuccauGCACACAGCGcaaGUgGCCGCc -3'
miRNA:   3'- caGCG------UGUGUGUUGCuuaCAgCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 25032 0.69 0.917693
Target:  5'- uUUGUGCACGCGACGc-UGUCaCCGUa -3'
miRNA:   3'- cAGCGUGUGUGUUGCuuACAGcGGCG- -5'
11290 3' -51.7 NC_003083.1 + 91999 0.72 0.762854
Target:  5'- --gGUAgACGCAauaacGCGAccGUCGCCGCg -3'
miRNA:   3'- cagCGUgUGUGU-----UGCUuaCAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 58273 0.68 0.944265
Target:  5'- --gGUGCGCACGACGugcAUGUggUGCCGUc -3'
miRNA:   3'- cagCGUGUGUGUUGCu--UACA--GCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 28529 0.72 0.762854
Target:  5'- gGUCGCAUAaccaaGCGGCG-GUGUCGuCUGCu -3'
miRNA:   3'- -CAGCGUGUg----UGUUGCuUACAGC-GGCG- -5'
11290 3' -51.7 NC_003083.1 + 112667 0.69 0.917693
Target:  5'- aUCGCauuACGCGCAguaACG-AUGU-GCCGCg -3'
miRNA:   3'- cAGCG---UGUGUGU---UGCuUACAgCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 88260 0.67 0.952677
Target:  5'- -cCGCGCaaacgcaGCGCAGCGGGcGcggUGCCGCg -3'
miRNA:   3'- caGCGUG-------UGUGUUGCUUaCa--GCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 24180 0.67 0.960929
Target:  5'- -aCGCAC-CGuCGGCGGAUGucccacUCGCCGa -3'
miRNA:   3'- caGCGUGuGU-GUUGCUUAC------AGCGGCg -5'
11290 3' -51.7 NC_003083.1 + 106463 0.72 0.800406
Target:  5'- aUCGUACACACuuauuaugauuuaAACGAcGUGUUGCaCGCc -3'
miRNA:   3'- cAGCGUGUGUG-------------UUGCU-UACAGCG-GCG- -5'
11290 3' -51.7 NC_003083.1 + 9470 0.71 0.845635
Target:  5'- gGUCGCGCGCGCAAuCGuu--UCGgCGCu -3'
miRNA:   3'- -CAGCGUGUGUGUU-GCuuacAGCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.