miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11312 3' -52.1 NC_003083.1 + 98965 0.66 0.966536
Target:  5'- gAGCGCgCGUACGCAGCuaauu-UGUa -3'
miRNA:   3'- gUUGCG-GCGUGCGUCGuucuuuACGa -5'
11312 3' -52.1 NC_003083.1 + 99663 0.66 0.965861
Target:  5'- aCGACGCCGCACaGguGaacgcguuAGUGCUu -3'
miRNA:   3'- -GUUGCGGCGUG-CguCguucu---UUACGA- -5'
11312 3' -52.1 NC_003083.1 + 44192 0.66 0.963065
Target:  5'- aGAgGCCGCcaGCGCAGCAcAGuacAUGUUc -3'
miRNA:   3'- gUUgCGGCG--UGCGUCGU-UCuu-UACGA- -5'
11312 3' -52.1 NC_003083.1 + 18342 0.66 0.963065
Target:  5'- aCAGCGCCG-GCGUacaAGCAAGAcaaaucuuUGCg -3'
miRNA:   3'- -GUUGCGGCgUGCG---UCGUUCUuu------ACGa -5'
11312 3' -52.1 NC_003083.1 + 88259 0.66 0.95935
Target:  5'- -cGCGCaaaCGCAgCGCAGCGGGcgcGGUGCc -3'
miRNA:   3'- guUGCG---GCGU-GCGUCGUUCu--UUACGa -5'
11312 3' -52.1 NC_003083.1 + 41145 0.66 0.95935
Target:  5'- -cGCGCCGCACcauuacgccguGCuuGCAuauAGAAAUGUa -3'
miRNA:   3'- guUGCGGCGUG-----------CGu-CGU---UCUUUACGa -5'
11312 3' -52.1 NC_003083.1 + 109522 0.66 0.95935
Target:  5'- aCGAUGCCGCGC-CAaCAacAGGGAUGUUa -3'
miRNA:   3'- -GUUGCGGCGUGcGUcGU--UCUUUACGA- -5'
11312 3' -52.1 NC_003083.1 + 52359 0.66 0.955386
Target:  5'- aCAACG-CGUugGUGGCc-GAAAUGCa -3'
miRNA:   3'- -GUUGCgGCGugCGUCGuuCUUUACGa -5'
11312 3' -52.1 NC_003083.1 + 24115 0.66 0.955386
Target:  5'- -cACGCCGUGCGUuGCA---GAUGCa -3'
miRNA:   3'- guUGCGGCGUGCGuCGUucuUUACGa -5'
11312 3' -52.1 NC_003083.1 + 56918 0.66 0.955386
Target:  5'- gCGGCGCCGaCACGCucGGCAA-AGAcGCa -3'
miRNA:   3'- -GUUGCGGC-GUGCG--UCGUUcUUUaCGa -5'
11312 3' -52.1 NC_003083.1 + 45657 0.66 0.951601
Target:  5'- aAACGCCaGCGCGCGGCuguaauacuuUGCc -3'
miRNA:   3'- gUUGCGG-CGUGCGUCGuucuuu----ACGa -5'
11312 3' -52.1 NC_003083.1 + 30381 0.66 0.951168
Target:  5'- aUAugGCCauuGUGCGCGGCGGuGucGUGCUg -3'
miRNA:   3'- -GUugCGG---CGUGCGUCGUU-CuuUACGA- -5'
11312 3' -52.1 NC_003083.1 + 59211 0.67 0.941951
Target:  5'- cCAGCGCCGUuaaACGC-GCAu-GGGUGCg -3'
miRNA:   3'- -GUUGCGGCG---UGCGuCGUucUUUACGa -5'
11312 3' -52.1 NC_003083.1 + 115407 0.67 0.936947
Target:  5'- aCGGCGCCaCugGCAGCucguuGAAA-GCa -3'
miRNA:   3'- -GUUGCGGcGugCGUCGuu---CUUUaCGa -5'
11312 3' -52.1 NC_003083.1 + 100724 0.67 0.931675
Target:  5'- uGGCGCCGCcCGCugauGCGcuAGAuucGUGCg -3'
miRNA:   3'- gUUGCGGCGuGCGu---CGU--UCUu--UACGa -5'
11312 3' -52.1 NC_003083.1 + 82385 0.67 0.928384
Target:  5'- gAGCGCCGCACauuuuuGCAAGAAGgucaacuuagccgauUGCa -3'
miRNA:   3'- gUUGCGGCGUGcgu---CGUUCUUU---------------ACGa -5'
11312 3' -52.1 NC_003083.1 + 105049 0.67 0.926136
Target:  5'- gGGCGUCGUGCGUuggauguuguGCcGGAAGUGCUc -3'
miRNA:   3'- gUUGCGGCGUGCGu---------CGuUCUUUACGA- -5'
11312 3' -52.1 NC_003083.1 + 94579 0.68 0.914251
Target:  5'- -cACGCCGCAgCGCcacgaccgauuGCAAGuguGAUGCg -3'
miRNA:   3'- guUGCGGCGU-GCGu----------CGUUCu--UUACGa -5'
11312 3' -52.1 NC_003083.1 + 27836 0.68 0.901301
Target:  5'- aUAACGuuGCACGCAaauuuGaCAAGAuuUGCc -3'
miRNA:   3'- -GUUGCggCGUGCGU-----C-GUUCUuuACGa -5'
11312 3' -52.1 NC_003083.1 + 10404 0.68 0.897211
Target:  5'- -cACGUCGCACGCAucuuguggcaguuuuGCAAauAAUGCUc -3'
miRNA:   3'- guUGCGGCGUGCGU---------------CGUUcuUUACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.