miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11319 5' -49.9 NC_003084.1 + 67205 0.66 0.995144
Target:  5'- gUCCACCACCGU--GAUCUGcgcgUCGg -3'
miRNA:   3'- -GGGUGGUGGCAaaUUGGGCuaaaGGC- -5'
11319 5' -49.9 NC_003084.1 + 82501 0.66 0.995068
Target:  5'- uUCCACCucuGCCGUguucacgUUAcuACCCGGcgUCCu -3'
miRNA:   3'- -GGGUGG---UGGCA-------AAU--UGGGCUaaAGGc -5'
11319 5' -49.9 NC_003084.1 + 53870 0.66 0.993433
Target:  5'- gCCACCgGCCGguugUUGGgUCGGUUUUCa -3'
miRNA:   3'- gGGUGG-UGGCa---AAUUgGGCUAAAGGc -5'
11319 5' -49.9 NC_003084.1 + 29270 0.66 0.993433
Target:  5'- -gCACCGCCGUaaucgGAUCUGAaaggcguguuUUUCCGu -3'
miRNA:   3'- ggGUGGUGGCAaa---UUGGGCU----------AAAGGC- -5'
11319 5' -49.9 NC_003084.1 + 18217 0.66 0.993433
Target:  5'- aCCCaacGCCACCGgcu-GCaCCGAauugUCCa -3'
miRNA:   3'- -GGG---UGGUGGCaaauUG-GGCUaa--AGGc -5'
11319 5' -49.9 NC_003084.1 + 66136 0.66 0.993433
Target:  5'- aCCguaGCaCGCCGggUGGCCCGAccccaCCGg -3'
miRNA:   3'- -GGg--UG-GUGGCaaAUUGGGCUaaa--GGC- -5'
11319 5' -49.9 NC_003084.1 + 52547 0.67 0.989994
Target:  5'- aCCCuCCAUUGUaUAGCUCGggUUCgCGa -3'
miRNA:   3'- -GGGuGGUGGCAaAUUGGGCuaAAG-GC- -5'
11319 5' -49.9 NC_003084.1 + 30921 0.67 0.988578
Target:  5'- aCCCG-CGCCGUUgaucUGGCaCgGAUUUCCc -3'
miRNA:   3'- -GGGUgGUGGCAA----AUUG-GgCUAAAGGc -5'
11319 5' -49.9 NC_003084.1 + 19708 0.67 0.988578
Target:  5'- aCC-UCGCCGggugcUAGCCCGuUUUCCa -3'
miRNA:   3'- gGGuGGUGGCaa---AUUGGGCuAAAGGc -5'
11319 5' -49.9 NC_003084.1 + 18584 0.67 0.987011
Target:  5'- aCCACCACCGUgcgGGCCauc--UCUGc -3'
miRNA:   3'- gGGUGGUGGCAaa-UUGGgcuaaAGGC- -5'
11319 5' -49.9 NC_003084.1 + 69078 0.67 0.985994
Target:  5'- uUCCACCACaCauuuugcgcuacaagGUgUGACCCGGggUCCa -3'
miRNA:   3'- -GGGUGGUG-G---------------CAaAUUGGGCUaaAGGc -5'
11319 5' -49.9 NC_003084.1 + 52720 0.67 0.983386
Target:  5'- aCCCaaauuGCCGCUGU---ACCCGAUgaaUUCGg -3'
miRNA:   3'- -GGG-----UGGUGGCAaauUGGGCUAa--AGGC- -5'
11319 5' -49.9 NC_003084.1 + 59988 0.67 0.983386
Target:  5'- aCCACCGCCGgaUAcuGCCCcaagauguacAUUUCCu -3'
miRNA:   3'- gGGUGGUGGCaaAU--UGGGc---------UAAAGGc -5'
11319 5' -49.9 NC_003084.1 + 41565 0.68 0.981309
Target:  5'- aCCAUCugCGcUUUGGCCCGucg-CCu -3'
miRNA:   3'- gGGUGGugGC-AAAUUGGGCuaaaGGc -5'
11319 5' -49.9 NC_003084.1 + 21839 0.68 0.973912
Target:  5'- uUCCAUCGCCGUgu-ACUCGAUaucacCCGu -3'
miRNA:   3'- -GGGUGGUGGCAaauUGGGCUAaa---GGC- -5'
11319 5' -49.9 NC_003084.1 + 21558 0.69 0.967924
Target:  5'- aCCACCACCGcgua--CCGG--UCCGg -3'
miRNA:   3'- gGGUGGUGGCaaauugGGCUaaAGGC- -5'
11319 5' -49.9 NC_003084.1 + 68225 0.69 0.96459
Target:  5'- gUCCACCAgCGUauccaagcugUAGCCCGGUggaaccaacguUUCCa -3'
miRNA:   3'- -GGGUGGUgGCAa---------AUUGGGCUA-----------AAGGc -5'
11319 5' -49.9 NC_003084.1 + 53137 0.69 0.96459
Target:  5'- gCCCugCACCuucUUUGGCCCGGgcgaCUGg -3'
miRNA:   3'- -GGGugGUGGc--AAAUUGGGCUaaa-GGC- -5'
11319 5' -49.9 NC_003084.1 + 65835 0.69 0.96459
Target:  5'- uCCCACCACUGgaaggUgcACCCGc---CCGa -3'
miRNA:   3'- -GGGUGGUGGCa----AauUGGGCuaaaGGC- -5'
11319 5' -49.9 NC_003084.1 + 85185 0.69 0.961021
Target:  5'- cCCCaACCGCgGU--GGuuCGAUUUCCGa -3'
miRNA:   3'- -GGG-UGGUGgCAaaUUggGCUAAAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.