miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11326 3' -57.2 NC_003084.1 + 65323 0.66 0.802321
Target:  5'- aACCAgaugGCCguGCAGCuGACCGgcGCUCUa -3'
miRNA:   3'- -UGGU----UGG--CGUCGcCUGGCuuUGGGAg -5'
11326 3' -57.2 NC_003084.1 + 17833 0.66 0.793172
Target:  5'- aGuuGGCCGUAcGUGGACgGcacGCCCUCg -3'
miRNA:   3'- -UggUUGGCGU-CGCCUGgCuu-UGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 95078 0.66 0.793172
Target:  5'- uCCAG-CGCaaGGUGGAuCCGGugguGGCCCUCg -3'
miRNA:   3'- uGGUUgGCG--UCGCCU-GGCU----UUGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 46067 0.66 0.793172
Target:  5'- uCCAACCGaGGCGGGCCcaacuucuucGAcGACCC-Ca -3'
miRNA:   3'- uGGUUGGCgUCGCCUGG----------CU-UUGGGaG- -5'
11326 3' -57.2 NC_003084.1 + 81705 0.66 0.774434
Target:  5'- cGCCGuCCGCAGCuucGGAUauaCGu--CCCUCa -3'
miRNA:   3'- -UGGUuGGCGUCG---CCUG---GCuuuGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 100166 0.66 0.774434
Target:  5'- cACUAAUCagaauCAGCGGguuGCCGGAGCUCUUg -3'
miRNA:   3'- -UGGUUGGc----GUCGCC---UGGCUUUGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 43570 0.66 0.774434
Target:  5'- uGCC-ACCGCGGaacgGGACC---GCCUUCg -3'
miRNA:   3'- -UGGuUGGCGUCg---CCUGGcuuUGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 2254 0.66 0.767747
Target:  5'- aACUAGCCGCAcagcuccaauguuguGCGGGCgGGgcuguuggugcugGACaCCUCg -3'
miRNA:   3'- -UGGUUGGCGU---------------CGCCUGgCU-------------UUG-GGAG- -5'
11326 3' -57.2 NC_003084.1 + 31402 0.66 0.764862
Target:  5'- gACCcACUGuUGGCGGACCGGAuaaACaCCUg -3'
miRNA:   3'- -UGGuUGGC-GUCGCCUGGCUU---UG-GGAg -5'
11326 3' -57.2 NC_003084.1 + 12181 0.66 0.755169
Target:  5'- cGCCAACCcCGGCGuACUGAAcaacGCCUUUg -3'
miRNA:   3'- -UGGUUGGcGUCGCcUGGCUU----UGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 77850 0.66 0.755169
Target:  5'- cCCAAaaGCGuUGGACCGguACUCUCa -3'
miRNA:   3'- uGGUUggCGUcGCCUGGCuuUGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 67030 0.67 0.744376
Target:  5'- aACCAggcucgggaauacAgUGCAGUauACCGggGCCCUCg -3'
miRNA:   3'- -UGGU-------------UgGCGUCGccUGGCuuUGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 83973 0.67 0.735454
Target:  5'- cCCGACUcCAGCGGACCaguuaAAGCgCUCu -3'
miRNA:   3'- uGGUUGGcGUCGCCUGGc----UUUGgGAG- -5'
11326 3' -57.2 NC_003084.1 + 17212 0.67 0.725453
Target:  5'- cGCCGuacGCCGCgAGCGGcACCGG--UCCUg -3'
miRNA:   3'- -UGGU---UGGCG-UCGCC-UGGCUuuGGGAg -5'
11326 3' -57.2 NC_003084.1 + 45997 0.67 0.715368
Target:  5'- aGCCAACUGCAGCc--CCGGguccAGCCCa- -3'
miRNA:   3'- -UGGUUGGCGUCGccuGGCU----UUGGGag -5'
11326 3' -57.2 NC_003084.1 + 61808 0.68 0.684711
Target:  5'- cUCAGuCUGCGGCGGAUUGuccACCUUCa -3'
miRNA:   3'- uGGUU-GGCGUCGCCUGGCuu-UGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 80266 0.68 0.684711
Target:  5'- cACCAGCgccuUGCaucuaGGUGGACCGAGAgCCCa- -3'
miRNA:   3'- -UGGUUG----GCG-----UCGCCUGGCUUU-GGGag -5'
11326 3' -57.2 NC_003084.1 + 32486 0.68 0.673355
Target:  5'- cGCUaAACC-CGGCGGACCGcauaagcGAGCCgUCa -3'
miRNA:   3'- -UGG-UUGGcGUCGCCUGGC-------UUUGGgAG- -5'
11326 3' -57.2 NC_003084.1 + 30443 0.68 0.664033
Target:  5'- cGCCAACUGCcGCuaACgCGAAuuGCCCUCg -3'
miRNA:   3'- -UGGUUGGCGuCGccUG-GCUU--UGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 99099 0.69 0.622425
Target:  5'- gGCCA--CGUuGUGGACCGAAgcGCCCUa -3'
miRNA:   3'- -UGGUugGCGuCGCCUGGCUU--UGGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.