miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11326 3' -57.2 NC_003084.1 + 45997 0.67 0.715368
Target:  5'- aGCCAACUGCAGCc--CCGGguccAGCCCa- -3'
miRNA:   3'- -UGGUUGGCGUCGccuGGCU----UUGGGag -5'
11326 3' -57.2 NC_003084.1 + 85184 0.71 0.490409
Target:  5'- cCCAACCGCGGUGGuuCGAuuUCCg- -3'
miRNA:   3'- uGGUUGGCGUCGCCugGCUuuGGGag -5'
11326 3' -57.2 NC_003084.1 + 38454 0.72 0.46166
Target:  5'- cGCCGACUGCuGCGGAaUCGAuugcaAGCCCa- -3'
miRNA:   3'- -UGGUUGGCGuCGCCU-GGCU-----UUGGGag -5'
11326 3' -57.2 NC_003084.1 + 30486 0.72 0.424766
Target:  5'- gGCCAACUcgGGCGGACCGcAAcucACCUUCg -3'
miRNA:   3'- -UGGUUGGcgUCGCCUGGC-UU---UGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 97912 0.73 0.406991
Target:  5'- gGCCAACCacuGguGCGGuucacGCCGuucACCCUCg -3'
miRNA:   3'- -UGGUUGG---CguCGCC-----UGGCuu-UGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 39796 1.08 0.001669
Target:  5'- gACCAACCGCAGCGGACCGAAACCCUCc -3'
miRNA:   3'- -UGGUUGGCGUCGCCUGGCUUUGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 65323 0.66 0.802321
Target:  5'- aACCAgaugGCCguGCAGCuGACCGgcGCUCUa -3'
miRNA:   3'- -UGGU----UGG--CGUCGcCUGGCuuUGGGAg -5'
11326 3' -57.2 NC_003084.1 + 81705 0.66 0.774434
Target:  5'- cGCCGuCCGCAGCuucGGAUauaCGu--CCCUCa -3'
miRNA:   3'- -UGGUuGGCGUCG---CCUG---GCuuuGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 43570 0.66 0.774434
Target:  5'- uGCC-ACCGCGGaacgGGACC---GCCUUCg -3'
miRNA:   3'- -UGGuUGGCGUCg---CCUGGcuuUGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 2254 0.66 0.767747
Target:  5'- aACUAGCCGCAcagcuccaauguuguGCGGGCgGGgcuguuggugcugGACaCCUCg -3'
miRNA:   3'- -UGGUUGGCGU---------------CGCCUGgCU-------------UUG-GGAG- -5'
11326 3' -57.2 NC_003084.1 + 17212 0.67 0.725453
Target:  5'- cGCCGuacGCCGCgAGCGGcACCGG--UCCUg -3'
miRNA:   3'- -UGGU---UGGCG-UCGCC-UGGCUuuGGGAg -5'
11326 3' -57.2 NC_003084.1 + 95078 0.66 0.793172
Target:  5'- uCCAG-CGCaaGGUGGAuCCGGugguGGCCCUCg -3'
miRNA:   3'- uGGUUgGCG--UCGCCU-GGCU----UUGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 83973 0.67 0.735454
Target:  5'- cCCGACUcCAGCGGACCaguuaAAGCgCUCu -3'
miRNA:   3'- uGGUUGGcGUCGCCUGGc----UUUGgGAG- -5'
11326 3' -57.2 NC_003084.1 + 100166 0.66 0.774434
Target:  5'- cACUAAUCagaauCAGCGGguuGCCGGAGCUCUUg -3'
miRNA:   3'- -UGGUUGGc----GUCGCC---UGGCUUUGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 46067 0.66 0.793172
Target:  5'- uCCAACCGaGGCGGGCCcaacuucuucGAcGACCC-Ca -3'
miRNA:   3'- uGGUUGGCgUCGCCUGG----------CU-UUGGGaG- -5'
11326 3' -57.2 NC_003084.1 + 12181 0.66 0.755169
Target:  5'- cGCCAACCcCGGCGuACUGAAcaacGCCUUUg -3'
miRNA:   3'- -UGGUUGGcGUCGCcUGGCUU----UGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 17660 0.7 0.52997
Target:  5'- cACCGACCGU--CGGugCacGACCCUCa -3'
miRNA:   3'- -UGGUUGGCGucGCCugGcuUUGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 17833 0.66 0.793172
Target:  5'- aGuuGGCCGUAcGUGGACgGcacGCCCUCg -3'
miRNA:   3'- -UggUUGGCGU-CGCCUGgCuu-UGGGAG- -5'
11326 3' -57.2 NC_003084.1 + 31402 0.66 0.764862
Target:  5'- gACCcACUGuUGGCGGACCGGAuaaACaCCUg -3'
miRNA:   3'- -UGGuUGGC-GUCGCCUGGCUU---UG-GGAg -5'
11326 3' -57.2 NC_003084.1 + 77850 0.66 0.755169
Target:  5'- cCCAAaaGCGuUGGACCGguACUCUCa -3'
miRNA:   3'- uGGUUggCGUcGCCUGGCuuUGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.