miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11334 3' -57.5 NC_003084.1 + 49413 1.07 0.00165
Target:  5'- uUAGCACCACCAACUACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGAUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 49244 1.07 0.00165
Target:  5'- uUAGCACCACCAACUACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGAUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 49498 1.07 0.001698
Target:  5'- cUAGCACCACCAACUACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGAUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 68428 1.06 0.001957
Target:  5'- uUGGCACCACCGACUACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGAUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 68510 0.99 0.005922
Target:  5'- uUAGCACCACCAACgACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGaUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 49329 0.99 0.005922
Target:  5'- uUAGCACCACCAACgACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGaUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 68687 0.93 0.017849
Target:  5'- uUAGCACCACCGACaACGGCCCCACa- -3'
miRNA:   3'- -AUCGUGGUGGUUGaUGCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 68573 0.88 0.038076
Target:  5'- cUAGCACCACaAACaACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGgUUGaUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 49579 0.87 0.045
Target:  5'- cUAGCACgACUAACgACGGCCCCGCGAa -3'
miRNA:   3'- -AUCGUGgUGGUUGaUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 68811 0.8 0.130311
Target:  5'- cUAGCACCACCGuuauCGGCCCCACc- -3'
miRNA:   3'- -AUCGUGGUGGUugauGCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 70911 0.75 0.266279
Target:  5'- gAGCACCAcuccacgucCCAACUuuuuCGGCUCCACGu -3'
miRNA:   3'- aUCGUGGU---------GGUUGAu---GCCGGGGUGCu -5'
11334 3' -57.5 NC_003084.1 + 53100 0.75 0.266279
Target:  5'- aUAGCACCACCGuACUGCGcagugcaCCCCACa- -3'
miRNA:   3'- -AUCGUGGUGGU-UGAUGCc------GGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 96619 0.72 0.394778
Target:  5'- -cGUGgCGCUAGCUGCGGCUgCGCGAc -3'
miRNA:   3'- auCGUgGUGGUUGAUGCCGGgGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 38071 0.71 0.458165
Target:  5'- aAGUucaACC-CCGACUGCGGCUCCAUu- -3'
miRNA:   3'- aUCG---UGGuGGUUGAUGCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 31944 0.71 0.467661
Target:  5'- uUGGCACCACCGcggGCU-CGGCCgCAUu- -3'
miRNA:   3'- -AUCGUGGUGGU---UGAuGCCGGgGUGcu -5'
11334 3' -57.5 NC_003084.1 + 37801 0.71 0.467661
Target:  5'- uUAGCACCGCaAAUgugGGCCCCACa- -3'
miRNA:   3'- -AUCGUGGUGgUUGaugCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 99249 0.71 0.467661
Target:  5'- gAGCcCCACUuggugaUGCGGCCCgACGAa -3'
miRNA:   3'- aUCGuGGUGGuug---AUGCCGGGgUGCU- -5'
11334 3' -57.5 NC_003084.1 + 39107 0.7 0.513566
Target:  5'- cUGGCAgCACCGAUucaccccgagcucgUGCGGCccguuCCCGCGAc -3'
miRNA:   3'- -AUCGUgGUGGUUG--------------AUGCCG-----GGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 101402 0.7 0.526594
Target:  5'- cAGC-UCACUAAUggucauuUGGCCCCACGAa -3'
miRNA:   3'- aUCGuGGUGGUUGau-----GCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 7015 0.7 0.536699
Target:  5'- cAGCACCACCGuaucccACcACGGUCCaCACu- -3'
miRNA:   3'- aUCGUGGUGGU------UGaUGCCGGG-GUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.