miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11334 3' -57.5 NC_003084.1 + 6903 0.7 0.536699
Target:  5'- aUGGaCugCGCCAACUgGCGGCCaCCAagGAg -3'
miRNA:   3'- -AUC-GugGUGGUUGA-UGCCGG-GGUg-CU- -5'
11334 3' -57.5 NC_003084.1 + 7015 0.7 0.536699
Target:  5'- cAGCACCACCGuaucccACcACGGUCCaCACu- -3'
miRNA:   3'- aUCGUGGUGGU------UGaUGCCGGG-GUGcu -5'
11334 3' -57.5 NC_003084.1 + 9411 0.66 0.74307
Target:  5'- gUAGCACCACCuguagcCGaGCCCCAg-- -3'
miRNA:   3'- -AUCGUGGUGGuugau-GC-CGGGGUgcu -5'
11334 3' -57.5 NC_003084.1 + 25486 0.66 0.723017
Target:  5'- cAGCugUACCAACgcacCGGCCCgcCACc- -3'
miRNA:   3'- aUCGugGUGGUUGau--GCCGGG--GUGcu -5'
11334 3' -57.5 NC_003084.1 + 29630 0.66 0.769483
Target:  5'- cAGCGCCGCgGugucgauuagugucAUUAUGGCCgucuuaCCACGAu -3'
miRNA:   3'- aUCGUGGUGgU--------------UGAUGCCGG------GGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 31944 0.71 0.467661
Target:  5'- uUGGCACCACCGcggGCU-CGGCCgCAUu- -3'
miRNA:   3'- -AUCGUGGUGGU---UGAuGCCGGgGUGcu -5'
11334 3' -57.5 NC_003084.1 + 35247 0.66 0.723017
Target:  5'- gUAGCACCACuugagCAugUGCGGUgUCACc- -3'
miRNA:   3'- -AUCGUGGUG-----GUugAUGCCGgGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 36197 0.68 0.629849
Target:  5'- -cGCACCGCCAACU--GGUggUCCACGu -3'
miRNA:   3'- auCGUGGUGGUUGAugCCG--GGGUGCu -5'
11334 3' -57.5 NC_003084.1 + 37801 0.71 0.467661
Target:  5'- uUAGCACCGCaAAUgugGGCCCCACa- -3'
miRNA:   3'- -AUCGUGGUGgUUGaugCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 37866 0.66 0.752949
Target:  5'- gAGC-CCAaCAuuugGCGGCCCCACa- -3'
miRNA:   3'- aUCGuGGUgGUuga-UGCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 37996 0.69 0.598503
Target:  5'- gUGGgGCCGCCAAaugUugGGCUCCAUa- -3'
miRNA:   3'- -AUCgUGGUGGUUg--AugCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 38071 0.71 0.458165
Target:  5'- aAGUucaACC-CCGACUGCGGCUCCAUu- -3'
miRNA:   3'- aUCG---UGGuGGUUGAUGCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 39107 0.7 0.513566
Target:  5'- cUGGCAgCACCGAUucaccccgagcucgUGCGGCccguuCCCGCGAc -3'
miRNA:   3'- -AUCGUgGUGGUUG--------------AUGCCG-----GGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 39527 0.66 0.758823
Target:  5'- aAGCA-CACCGGaauggggcgauuaUACGGCCCCggGCGGu -3'
miRNA:   3'- aUCGUgGUGGUUg------------AUGCCGGGG--UGCU- -5'
11334 3' -57.5 NC_003084.1 + 44165 0.67 0.68201
Target:  5'- gAGCGCCgcauugaugACCAGC-GCGGCUCCAa-- -3'
miRNA:   3'- aUCGUGG---------UGGUUGaUGCCGGGGUgcu -5'
11334 3' -57.5 NC_003084.1 + 48197 0.67 0.69235
Target:  5'- gUAGCACCACUccucgACGcacaCCCCACGGg -3'
miRNA:   3'- -AUCGUGGUGGuuga-UGCc---GGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 49244 1.07 0.00165
Target:  5'- uUAGCACCACCAACUACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGAUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 49329 0.99 0.005922
Target:  5'- uUAGCACCACCAACgACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGaUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 49413 1.07 0.00165
Target:  5'- uUAGCACCACCAACUACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGAUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 49498 1.07 0.001698
Target:  5'- cUAGCACCACCAACUACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGAUGCCGGGGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.