miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11334 3' -57.5 NC_003084.1 + 37866 0.66 0.752949
Target:  5'- gAGC-CCAaCAuuugGCGGCCCCACa- -3'
miRNA:   3'- aUCGuGGUgGUuga-UGCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 85267 0.69 0.598503
Target:  5'- -uGCAUCAUCAcACUGCGaagcGCCUCACGGg -3'
miRNA:   3'- auCGUGGUGGU-UGAUGC----CGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 86977 0.68 0.619388
Target:  5'- gAGCACCAUCGG-UugGGCCgCCAgUGAu -3'
miRNA:   3'- aUCGUGGUGGUUgAugCCGG-GGU-GCU- -5'
11334 3' -57.5 NC_003084.1 + 105487 0.68 0.629849
Target:  5'- -uGuCACCGCaCGACUugGGCUCCAa-- -3'
miRNA:   3'- auC-GUGGUG-GUUGAugCCGGGGUgcu -5'
11334 3' -57.5 NC_003084.1 + 68301 0.68 0.650769
Target:  5'- -uGCACCACCAAC--CGGuUCCCAUa- -3'
miRNA:   3'- auCGUGGUGGUUGauGCC-GGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 74311 0.67 0.702638
Target:  5'- cGGCAUCACCAguucACUGuagcgcUGGCgCCACGu -3'
miRNA:   3'- aUCGUGGUGGU----UGAU------GCCGgGGUGCu -5'
11334 3' -57.5 NC_003084.1 + 35247 0.66 0.723017
Target:  5'- gUAGCACCACuugagCAugUGCGGUgUCACc- -3'
miRNA:   3'- -AUCGUGGUG-----GUugAUGCCGgGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 9411 0.66 0.74307
Target:  5'- gUAGCACCACCuguagcCGaGCCCCAg-- -3'
miRNA:   3'- -AUCGUGGUGGuugau-GC-CGGGGUgcu -5'
11334 3' -57.5 NC_003084.1 + 103857 0.66 0.74307
Target:  5'- gAGCuCCACCGA--GCGGUCgCCACa- -3'
miRNA:   3'- aUCGuGGUGGUUgaUGCCGG-GGUGcu -5'
11334 3' -57.5 NC_003084.1 + 64323 0.69 0.59746
Target:  5'- cAGUugCucacguccacgaaGCCGugUACGGCCaCCACGu -3'
miRNA:   3'- aUCGugG-------------UGGUugAUGCCGG-GGUGCu -5'
11334 3' -57.5 NC_003084.1 + 88717 0.69 0.571516
Target:  5'- cUGGUGCCGCUgaagcccaucaagauGACUAUGGCCUCguACGAu -3'
miRNA:   3'- -AUCGUGGUGG---------------UUGAUGCCGGGG--UGCU- -5'
11334 3' -57.5 NC_003084.1 + 77665 0.69 0.557102
Target:  5'- ---aACCGCCAcauugugguGCUAUGGUCCUACGGu -3'
miRNA:   3'- aucgUGGUGGU---------UGAUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 68510 0.99 0.005922
Target:  5'- uUAGCACCACCAACgACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGaUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 68687 0.93 0.017849
Target:  5'- uUAGCACCACCGACaACGGCCCCACa- -3'
miRNA:   3'- -AUCGUGGUGGUUGaUGCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 68573 0.88 0.038076
Target:  5'- cUAGCACCACaAACaACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGgUUGaUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 68811 0.8 0.130311
Target:  5'- cUAGCACCACCGuuauCGGCCCCACc- -3'
miRNA:   3'- -AUCGUGGUGGUugauGCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 70911 0.75 0.266279
Target:  5'- gAGCACCAcuccacgucCCAACUuuuuCGGCUCCACGu -3'
miRNA:   3'- aUCGUGGU---------GGUUGAu---GCCGGGGUGCu -5'
11334 3' -57.5 NC_003084.1 + 99249 0.71 0.467661
Target:  5'- gAGCcCCACUuggugaUGCGGCCCgACGAa -3'
miRNA:   3'- aUCGuGGUGGuug---AUGCCGGGgUGCU- -5'
11334 3' -57.5 NC_003084.1 + 37801 0.71 0.467661
Target:  5'- uUAGCACCGCaAAUgugGGCCCCACa- -3'
miRNA:   3'- -AUCGUGGUGgUUGaugCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 7015 0.7 0.536699
Target:  5'- cAGCACCACCGuaucccACcACGGUCCaCACu- -3'
miRNA:   3'- aUCGUGGUGGU------UGaUGCCGGG-GUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.