Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11336 | 3' | -54.2 | NC_003084.1 | + | 25494 | 0.73 | 0.481388 |
Target: 5'- -uUGCgauacAGCugUACCAACgcacCGGCCCg -3' miRNA: 3'- uuACGa----UCGugGUGGUUGau--GCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 29230 | 0.73 | 0.5117 |
Target: 5'- cGUGCUAaCGCgCACCAAUcgUACGGCCg -3' miRNA: 3'- uUACGAUcGUG-GUGGUUG--AUGCCGGg -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 39108 | 0.72 | 0.539636 |
Target: 5'- ---uCUGGCAgCACCGAUucaccccgagcucgUGCGGCCCg -3' miRNA: 3'- uuacGAUCGUgGUGGUUG--------------AUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 68737 | 0.72 | 0.553273 |
Target: 5'- uGUGUUAGCACgACCGAC-ACcgGGUCCa -3' miRNA: 3'- uUACGAUCGUGgUGGUUGaUG--CCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 51463 | 0.72 | 0.574444 |
Target: 5'- --aGCUcacAGCACCGguccaccuUCAACcACGGCCCa -3' miRNA: 3'- uuaCGA---UCGUGGU--------GGUUGaUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 47624 | 0.71 | 0.621566 |
Target: 5'- aAGUGC-AGCGCCACCAgcaugaaccacucucGCacgcgcuuggugUACGGUCCa -3' miRNA: 3'- -UUACGaUCGUGGUGGU---------------UG------------AUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 82201 | 0.7 | 0.660279 |
Target: 5'- cGGUGCaucaaaauUAGCACCGCCAA--ACGGUUCu -3' miRNA: 3'- -UUACG--------AUCGUGGUGGUUgaUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 37710 | 0.7 | 0.670994 |
Target: 5'- cGGUGC-AGUACCACCA--UACGaGCCUc -3' miRNA: 3'- -UUACGaUCGUGGUGGUugAUGC-CGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 77228 | 0.7 | 0.670994 |
Target: 5'- -uUGUUGGgGaaGCCAGCacgGCGGCCCu -3' miRNA: 3'- uuACGAUCgUggUGGUUGa--UGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 53117 | 0.7 | 0.670994 |
Target: 5'- cGGUGCUaccaccauuuauAGCACCACCGuACUGCGcagugcacCCCa -3' miRNA: 3'- -UUACGA------------UCGUGGUGGU-UGAUGCc-------GGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 33523 | 0.7 | 0.670994 |
Target: 5'- cAAUGU--GCACC-CgGACgUGCGGCCCa -3' miRNA: 3'- -UUACGauCGUGGuGgUUG-AUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 36202 | 0.7 | 0.670994 |
Target: 5'- --aGCcccGCACCGCCAACUgGUGGUCCa -3' miRNA: 3'- uuaCGau-CGUGGUGGUUGA-UGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 25730 | 0.7 | 0.681674 |
Target: 5'- cGAUGUauGCAgCACCA---GCGGCCCg -3' miRNA: 3'- -UUACGauCGUgGUGGUugaUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 4522 | 0.7 | 0.692308 |
Target: 5'- --aGCUuGUACC-CCAACauUGCGGCCa -3' miRNA: 3'- uuaCGAuCGUGGuGGUUG--AUGCCGGg -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 35373 | 0.7 | 0.702888 |
Target: 5'- cAUGCUcaaguGGUGCUACCAcCUcGCGGUCCa -3' miRNA: 3'- uUACGA-----UCGUGGUGGUuGA-UGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 2528 | 0.7 | 0.702888 |
Target: 5'- --cGCUAGCAgCACCcACUacACGGUaaCCg -3' miRNA: 3'- uuaCGAUCGUgGUGGuUGA--UGCCG--GG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 30401 | 0.69 | 0.713402 |
Target: 5'- gGAUGCgguGCACCuCCAACUcgGGCaCCu -3' miRNA: 3'- -UUACGau-CGUGGuGGUUGAugCCG-GG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 10509 | 0.69 | 0.723839 |
Target: 5'- -cUGCUccaAGCACCccucgGCCAGCUGgagcguguUGGCCUg -3' miRNA: 3'- uuACGA---UCGUGG-----UGGUUGAU--------GCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 53017 | 0.69 | 0.723839 |
Target: 5'- --cGC-AGCACCACCuggGCUcGCGGUCg -3' miRNA: 3'- uuaCGaUCGUGGUGGu--UGA-UGCCGGg -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 35242 | 0.69 | 0.734188 |
Target: 5'- aGGUGgUAGCACCACuugagCAugUGCGGUgucaCCg -3' miRNA: 3'- -UUACgAUCGUGGUG-----GUugAUGCCG----GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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