Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11336 | 5' | -48.6 | NC_003084.1 | + | 68559 | 0.66 | 0.996284 |
Target: 5'- gUGGGgCCGuaGUcgGUGGUGCcAACAa -3' miRNA: 3'- -ACCUgGGUugUAaaCACCACGaUUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 70285 | 0.66 | 0.996284 |
Target: 5'- gUGGGcCCCGACAUggUGaccaUGGUGCg---- -3' miRNA: 3'- -ACCU-GGGUUGUAa-AC----ACCACGauugu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 91553 | 0.66 | 0.994835 |
Target: 5'- uUGG-CCUcGCAgUUGUGGUGUUGGg- -3' miRNA: 3'- -ACCuGGGuUGUaAACACCACGAUUgu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 52113 | 0.66 | 0.99296 |
Target: 5'- gGGACUCAA-----GUGGUGCUAGa- -3' miRNA: 3'- aCCUGGGUUguaaaCACCACGAUUgu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 7151 | 0.66 | 0.99296 |
Target: 5'- gUGGA-CCGugGUgggauacgGUGGUGCUGAg- -3' miRNA: 3'- -ACCUgGGUugUAaa------CACCACGAUUgu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 51418 | 0.67 | 0.991837 |
Target: 5'- gUGGGCCCGGguUgaaggUGgaccGGUGCUGcGCAa -3' miRNA: 3'- -ACCUGGGUUguAa----ACa---CCACGAU-UGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 68457 | 0.67 | 0.991837 |
Target: 5'- gUGGACCCGG----UGUcGGUugaGCUAACAu -3' miRNA: 3'- -ACCUGGGUUguaaACA-CCA---CGAUUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 91228 | 0.67 | 0.990577 |
Target: 5'- cGGACaCCAACG--UGUGGccCUGGCGc -3' miRNA: 3'- aCCUG-GGUUGUaaACACCacGAUUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 85684 | 0.67 | 0.989168 |
Target: 5'- aGGGCCC-GCGag-GUGGUGCa---- -3' miRNA: 3'- aCCUGGGuUGUaaaCACCACGauugu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 74883 | 0.67 | 0.987601 |
Target: 5'- cGGGgCCAugGUaccaaucgugUUGUGGUGCgUAAUg -3' miRNA: 3'- aCCUgGGUugUA----------AACACCACG-AUUGu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 79736 | 0.68 | 0.98184 |
Target: 5'- gGGAUCCGAagcugagGUGGUGCUcuCGa -3' miRNA: 3'- aCCUGGGUUguaaa--CACCACGAuuGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 77651 | 0.68 | 0.979289 |
Target: 5'- -uGACCgAAUAUcgaaaccgccacaUUGUGGUGCUAugGu -3' miRNA: 3'- acCUGGgUUGUA-------------AACACCACGAUugU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 49145 | 0.68 | 0.974269 |
Target: 5'- uUGGuACCCGAUcg--GUGGUGUgUGACAa -3' miRNA: 3'- -ACC-UGGGUUGuaaaCACCACG-AUUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 17709 | 0.69 | 0.971298 |
Target: 5'- uUGGGCCacguucugAGCGgaaUUGUGGUGCUggUg -3' miRNA: 3'- -ACCUGGg-------UUGUa--AACACCACGAuuGu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 102847 | 0.71 | 0.927361 |
Target: 5'- cUGGGCCuggaCAACGUUUuUGGUGCUGuCGg -3' miRNA: 3'- -ACCUGG----GUUGUAAAcACCACGAUuGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 28404 | 0.72 | 0.894965 |
Target: 5'- cUGGAuaCCCGugAUccggugguggUUGUGGUGCUGAa- -3' miRNA: 3'- -ACCU--GGGUugUA----------AACACCACGAUUgu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 37863 | 0.72 | 0.888398 |
Target: 5'- aUGGAgCCCAACAUUUggcggccccacaaaaGUGGacccguuaaagucgUGCUAACAa -3' miRNA: 3'- -ACCU-GGGUUGUAAA---------------CACC--------------ACGAUUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 49550 | 0.73 | 0.838398 |
Target: 5'- gUGGACCCGAUGUcgGUuGUGCUcACAu -3' miRNA: 3'- -ACCUGGGUUGUAaaCAcCACGAuUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 9542 | 0.73 | 0.82936 |
Target: 5'- gGGGCUCGGCuacagGUGGUGCU-ACAu -3' miRNA: 3'- aCCUGGGUUGuaaa-CACCACGAuUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 68843 | 0.74 | 0.820109 |
Target: 5'- --cACCCGACAUgaGUGGUGCU-ACAu -3' miRNA: 3'- accUGGGUUGUAaaCACCACGAuUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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