Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11337 | 5' | -47.3 | NC_003084.1 | + | 40318 | 0.69 | 0.984411 |
Target: 5'- -uGGGCUGGguagcgcAUGaUGaGCACgGCCACCa -3' miRNA: 3'- auUUCGAUU-------UACaAC-CGUGgUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 42971 | 0.69 | 0.98461 |
Target: 5'- uUAAGGUgcGAUuuUUGGacaCACCACCACCa -3' miRNA: 3'- -AUUUCGauUUAc-AACC---GUGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 49345 | 0.69 | 0.98461 |
Target: 5'- -cAAGCaacuuUAAAUGUUaGCACCACCAa- -3' miRNA: 3'- auUUCG-----AUUUACAAcCGUGGUGGUgg -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 36277 | 0.69 | 0.986489 |
Target: 5'- uUAGGGCcAAAUcgUGGC-CCGCUGCCg -3' miRNA: 3'- -AUUUCGaUUUAcaACCGuGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 22959 | 0.69 | 0.986489 |
Target: 5'- --cAGCUGAuuguUGUUGaGCGCCAaCAUCg -3' miRNA: 3'- auuUCGAUUu---ACAAC-CGUGGUgGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 52673 | 0.68 | 0.988188 |
Target: 5'- -cGAGCUAuacAAUGgagGGUucgggugcauACCACUACCa -3' miRNA: 3'- auUUCGAU---UUACaa-CCG----------UGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 53344 | 0.68 | 0.988188 |
Target: 5'- aAAGGUccaaUAGcgGUUGGCAaacuCCuCCACCa -3' miRNA: 3'- aUUUCG----AUUuaCAACCGU----GGuGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 98222 | 0.68 | 0.98957 |
Target: 5'- --cGGCgcgcgGGAUGUuggUGGCACCaaacguuGCCAUCg -3' miRNA: 3'- auuUCGa----UUUACA---ACCGUGG-------UGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 89376 | 0.68 | 0.990555 |
Target: 5'- uUGAAGCUGGuuucgccggGGUGCCACUugCg -3' miRNA: 3'- -AUUUCGAUUuacaa----CCGUGGUGGugG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 49775 | 0.68 | 0.991085 |
Target: 5'- --uAGCUAAAg--UGaGCACCACUGCg -3' miRNA: 3'- auuUCGAUUUacaAC-CGUGGUGGUGg -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 31876 | 0.68 | 0.991085 |
Target: 5'- cAGAGC-AAGU-UUGGCGauagCACCACCg -3' miRNA: 3'- aUUUCGaUUUAcAACCGUg---GUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 94917 | 0.68 | 0.991085 |
Target: 5'- cAAGGCgauc-GUUGaGCcccacgaggGCCACCACCg -3' miRNA: 3'- aUUUCGauuuaCAAC-CG---------UGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 46743 | 0.68 | 0.992306 |
Target: 5'- aAAAGUUGGAUGaagucGGUGCCccgguCCACCg -3' miRNA: 3'- aUUUCGAUUUACaa---CCGUGGu----GGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 10488 | 0.68 | 0.992306 |
Target: 5'- --cAGCUGGagcGUGUUGGCcugguCCAC-ACCg -3' miRNA: 3'- auuUCGAUU---UACAACCGu----GGUGgUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 54929 | 0.67 | 0.994166 |
Target: 5'- cGAAGUgGAGUGgacggccgaccGGUGCUACCACCc -3' miRNA: 3'- aUUUCGaUUUACaa---------CCGUGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 64903 | 0.67 | 0.994258 |
Target: 5'- gUAGGGCggcAAAUGUUaGGUAgaguccauccuccUCACCACCu -3' miRNA: 3'- -AUUUCGa--UUUACAA-CCGU-------------GGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 20105 | 0.67 | 0.994348 |
Target: 5'- gUAAAGUUGAccugUGGUuCCAUCACCu -3' miRNA: 3'- -AUUUCGAUUuacaACCGuGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 96430 | 0.67 | 0.995191 |
Target: 5'- aGAAGCguacaGUcGcCGCCACCACCa -3' miRNA: 3'- aUUUCGauuuaCAaCcGUGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 100966 | 0.67 | 0.995191 |
Target: 5'- gAAGGCUGca-GUcacCACCACCGCCg -3' miRNA: 3'- aUUUCGAUuuaCAaccGUGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 48060 | 0.67 | 0.995191 |
Target: 5'- ---cGUgGGGUGUgcgucgaggagUGGUGCUACCACCg -3' miRNA: 3'- auuuCGaUUUACA-----------ACCGUGGUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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