miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11338 5' -53.5 NC_003084.1 + 94309 0.66 0.920846
Target:  5'- cGUAGCACCGgaggGUugUGUGCcacuGGUGUa -3'
miRNA:   3'- aUAUCGUGGUgg--CAugACGCG----UCACG- -5'
11338 5' -53.5 NC_003084.1 + 3299 0.66 0.920846
Target:  5'- --gAGCuCCGCUgGUGCUGC-UGGUGCu -3'
miRNA:   3'- auaUCGuGGUGG-CAUGACGcGUCACG- -5'
11338 5' -53.5 NC_003084.1 + 31861 0.66 0.920846
Target:  5'- gAUAGCACCACCGcaauCU-CGaauauGUGCu -3'
miRNA:   3'- aUAUCGUGGUGGCau--GAcGCgu---CACG- -5'
11338 5' -53.5 NC_003084.1 + 102982 0.66 0.914819
Target:  5'- --cAGCACCAaaaaCGUugUccagGCcCAGUGCg -3'
miRNA:   3'- auaUCGUGGUg---GCAugA----CGcGUCACG- -5'
11338 5' -53.5 NC_003084.1 + 42463 0.66 0.901973
Target:  5'- --cGGCACgACCgGUGCU-CGCGGUuauGCg -3'
miRNA:   3'- auaUCGUGgUGG-CAUGAcGCGUCA---CG- -5'
11338 5' -53.5 NC_003084.1 + 97863 0.66 0.901973
Target:  5'- --aGGCACCACuCG-AUcaaGCAGUGCa -3'
miRNA:   3'- auaUCGUGGUG-GCaUGacgCGUCACG- -5'
11338 5' -53.5 NC_003084.1 + 107035 0.66 0.895159
Target:  5'- --cAGCACCACUGguugcucaACUGCaccGCAGgGCc -3'
miRNA:   3'- auaUCGUGGUGGCa-------UGACG---CGUCaCG- -5'
11338 5' -53.5 NC_003084.1 + 64400 0.67 0.88077
Target:  5'- --gGGCAgguCCACCGUuagGUaGCGGUGCu -3'
miRNA:   3'- auaUCGU---GGUGGCAugaCG-CGUCACG- -5'
11338 5' -53.5 NC_003084.1 + 53015 0.67 0.865395
Target:  5'- --cAGCACCACCuggGCU-CGCGGUcGUg -3'
miRNA:   3'- auaUCGUGGUGGca-UGAcGCGUCA-CG- -5'
11338 5' -53.5 NC_003084.1 + 82278 0.67 0.857354
Target:  5'- --aAGCACCACCGUAaUGCcaaguacguaAGUGUa -3'
miRNA:   3'- auaUCGUGGUGGCAUgACGcg--------UCACG- -5'
11338 5' -53.5 NC_003084.1 + 65461 0.68 0.840599
Target:  5'- uUAUGGgACCACCGuUGgUGUGCcgAGUGg -3'
miRNA:   3'- -AUAUCgUGGUGGC-AUgACGCG--UCACg -5'
11338 5' -53.5 NC_003084.1 + 37629 0.68 0.83278
Target:  5'- aAUAGCACCACCGgACcguugaccguaacaUGguugagcugacgaauUGCAGUGCc -3'
miRNA:   3'- aUAUCGUGGUGGCaUG--------------AC---------------GCGUCACG- -5'
11338 5' -53.5 NC_003084.1 + 63865 0.68 0.831901
Target:  5'- --cGGCAuCCGCUgcugGUGCUGgaaacgaGCAGUGCa -3'
miRNA:   3'- auaUCGU-GGUGG----CAUGACg------CGUCACG- -5'
11338 5' -53.5 NC_003084.1 + 103627 0.68 0.831901
Target:  5'- --gAGCACCGCCGUgagcAUUGUaacgaugaGCAGgGCg -3'
miRNA:   3'- auaUCGUGGUGGCA----UGACG--------CGUCaCG- -5'
11338 5' -53.5 NC_003084.1 + 99325 0.68 0.829252
Target:  5'- --gGGCACCucCCGUAUugggaggucgaauaUGCGCugcaguGGUGCg -3'
miRNA:   3'- auaUCGUGGu-GGCAUG--------------ACGCG------UCACG- -5'
11338 5' -53.5 NC_003084.1 + 49765 0.68 0.823
Target:  5'- --gAGCACCACUGcGCaUGC-CAGUGg -3'
miRNA:   3'- auaUCGUGGUGGCaUG-ACGcGUCACg -5'
11338 5' -53.5 NC_003084.1 + 93841 0.68 0.8221
Target:  5'- --gAGCgACCGCCGgACUGCgGCacaagauGGUGCc -3'
miRNA:   3'- auaUCG-UGGUGGCaUGACG-CG-------UCACG- -5'
11338 5' -53.5 NC_003084.1 + 49628 0.68 0.804629
Target:  5'- --aAGUucACCACUGgcaUGCGCAGUGg -3'
miRNA:   3'- auaUCG--UGGUGGCaugACGCGUCACg -5'
11338 5' -53.5 NC_003084.1 + 93984 0.68 0.804629
Target:  5'- -uUGGCACCAUC-UugUGCcGCAGUccgGCg -3'
miRNA:   3'- auAUCGUGGUGGcAugACG-CGUCA---CG- -5'
11338 5' -53.5 NC_003084.1 + 90319 0.68 0.801812
Target:  5'- ---cGCACagGCCGUACUGCucauuccaguacucGUAGUGUa -3'
miRNA:   3'- auauCGUGg-UGGCAUGACG--------------CGUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.