Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11359 | 3' | -49.9 | NC_003084.1 | + | 65701 | 0.69 | 0.94636 |
Target: 5'- -uCACCACCGGUGccGUUGgcAAGUcccgGUGUg -3' miRNA: 3'- acGUGGUGGCCAC--CAAU--UUCAa---CACG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 16745 | 0.69 | 0.94636 |
Target: 5'- gGgGCCGCCGGaGGUgaAAAGUUGcuagagGCa -3' miRNA: 3'- aCgUGGUGGCCaCCAa-UUUCAACa-----CG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 5987 | 0.69 | 0.950902 |
Target: 5'- gGCAa-ACgGGUGGUgcGAG-UGUGCa -3' miRNA: 3'- aCGUggUGgCCACCAauUUCaACACG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 10506 | 0.68 | 0.953924 |
Target: 5'- uUGCACgACUGGUGGaUAGGGUggacaaugagacgaUGacUGCg -3' miRNA: 3'- -ACGUGgUGGCCACCaAUUUCA--------------AC--ACG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 76234 | 0.68 | 0.95518 |
Target: 5'- aUGUcCCACCGGUGcccaggUGAGGgaaaaUGUGCc -3' miRNA: 3'- -ACGuGGUGGCCACca----AUUUCa----ACACG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 44576 | 0.68 | 0.95518 |
Target: 5'- aGUACaacucuaucaugCugUGGUGGUccucauuucUGGGGUUGUGCa -3' miRNA: 3'- aCGUG------------GugGCCACCA---------AUUUCAACACG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 5215 | 0.68 | 0.95518 |
Target: 5'- cGCACCACCGGUaGGUggaccGGUa---- -3' miRNA: 3'- aCGUGGUGGCCA-CCAauu--UCAacacg -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 64795 | 0.68 | 0.959198 |
Target: 5'- aGgGCCACCG-----UGAGGUUGUGCg -3' miRNA: 3'- aCgUGGUGGCcaccaAUUUCAACACG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 3653 | 0.68 | 0.966474 |
Target: 5'- --aACCACCGGUGGUgcaccGUUGa-- -3' miRNA: 3'- acgUGGUGGCCACCAauuu-CAACacg -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 25740 | 0.68 | 0.969746 |
Target: 5'- aGCACCAgCGGcccgGGUgcacgcuGGacgUGUGCg -3' miRNA: 3'- aCGUGGUgGCCa---CCAauu----UCa--ACACG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 61278 | 0.68 | 0.969746 |
Target: 5'- gUGCACCGagCGGUGGcgugguGGUcGUGUa -3' miRNA: 3'- -ACGUGGUg-GCCACCaauu--UCAaCACG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 100917 | 0.67 | 0.972784 |
Target: 5'- aGCcCCACCGGUGGagucaagAAGGUUc-GCu -3' miRNA: 3'- aCGuGGUGGCCACCaa-----UUUCAAcaCG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 97423 | 0.67 | 0.975594 |
Target: 5'- gGCACCGCCaGGUGGUUcccgcuGacGUGg -3' miRNA: 3'- aCGUGGUGG-CCACCAAuuu---CaaCACg -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 33370 | 0.67 | 0.978186 |
Target: 5'- cGCACuCcCCGGUGag-GAAGUUGgGCc -3' miRNA: 3'- aCGUG-GuGGCCACcaaUUUCAACaCG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 65962 | 0.67 | 0.980109 |
Target: 5'- gUGCACCuuCCaGUGGUgggaaacgcuAGUggGUGCa -3' miRNA: 3'- -ACGUGGu-GGcCACCAauu-------UCAa-CACG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 651 | 0.67 | 0.98057 |
Target: 5'- cGCACCAUUGc-GGUUccauccucGGUUGUGCg -3' miRNA: 3'- aCGUGGUGGCcaCCAAuu------UCAACACG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 99375 | 0.67 | 0.98057 |
Target: 5'- cGCAUCACCaaGUGGggcucgUAAAGUUG-GUc -3' miRNA: 3'- aCGUGGUGGc-CACCa-----AUUUCAACaCG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 83672 | 0.67 | 0.98057 |
Target: 5'- aUGCAUCcgaaCGGg---UAAAGUUGUGCg -3' miRNA: 3'- -ACGUGGug--GCCaccaAUUUCAACACG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 12406 | 0.67 | 0.98057 |
Target: 5'- cGCACCACUGc------AAGUUGUGCa -3' miRNA: 3'- aCGUGGUGGCcaccaauUUCAACACG- -5' |
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11359 | 3' | -49.9 | NC_003084.1 | + | 6409 | 0.67 | 0.982332 |
Target: 5'- aGCuCCACCGGUGcacccuccAGUcGUGCu -3' miRNA: 3'- aCGuGGUGGCCACcaauu---UCAaCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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