miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11359 3' -49.9 NC_003084.1 + 100917 0.67 0.972784
Target:  5'- aGCcCCACCGGUGGagucaagAAGGUUc-GCu -3'
miRNA:   3'- aCGuGGUGGCCACCaa-----UUUCAAcaCG- -5'
11359 3' -49.9 NC_003084.1 + 99375 0.67 0.98057
Target:  5'- cGCAUCACCaaGUGGggcucgUAAAGUUG-GUc -3'
miRNA:   3'- aCGUGGUGGc-CACCa-----AUUUCAACaCG- -5'
11359 3' -49.9 NC_003084.1 + 97423 0.67 0.975594
Target:  5'- gGCACCGCCaGGUGGUUcccgcuGacGUGg -3'
miRNA:   3'- aCGUGGUGG-CCACCAAuuu---CaaCACg -5'
11359 3' -49.9 NC_003084.1 + 96827 0.66 0.984746
Target:  5'- uUGCugCACauGUGGUUGcaccugcGGUUGUuGCu -3'
miRNA:   3'- -ACGugGUGgcCACCAAUu------UCAACA-CG- -5'
11359 3' -49.9 NC_003084.1 + 94309 0.66 0.988201
Target:  5'- cGUAgCACCGGagGGUUG----UGUGCc -3'
miRNA:   3'- aCGUgGUGGCCa-CCAAUuucaACACG- -5'
11359 3' -49.9 NC_003084.1 + 91565 0.72 0.858662
Target:  5'- aUGCugaACCACCGGUGGUccgcuccugcgagGUGCg -3'
miRNA:   3'- -ACG---UGGUGGCCACCAauuucaa------CACG- -5'
11359 3' -49.9 NC_003084.1 + 91437 0.7 0.91776
Target:  5'- cGgACCACCGGUGGUUcagcauauuccggcGAAGcuagcUGCa -3'
miRNA:   3'- aCgUGGUGGCCACCAA--------------UUUCaac--ACG- -5'
11359 3' -49.9 NC_003084.1 + 85580 0.7 0.913408
Target:  5'- cGguCCGCUGGUGGgUGAAaUUGUGg -3'
miRNA:   3'- aCguGGUGGCCACCaAUUUcAACACg -5'
11359 3' -49.9 NC_003084.1 + 83672 0.67 0.98057
Target:  5'- aUGCAUCcgaaCGGg---UAAAGUUGUGCg -3'
miRNA:   3'- -ACGUGGug--GCCaccaAUUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 78224 0.66 0.984746
Target:  5'- aGCuCCACCGcgaaacgcagucGUGGUUccGGUuguugUGUGCg -3'
miRNA:   3'- aCGuGGUGGC------------CACCAAuuUCA-----ACACG- -5'
11359 3' -49.9 NC_003084.1 + 76234 0.68 0.95518
Target:  5'- aUGUcCCACCGGUGcccaggUGAGGgaaaaUGUGCc -3'
miRNA:   3'- -ACGuGGUGGCCACca----AUUUCa----ACACG- -5'
11359 3' -49.9 NC_003084.1 + 70371 0.66 0.989684
Target:  5'- cGCAUgagUACCGGcGGUU--GGcUGUGCu -3'
miRNA:   3'- aCGUG---GUGGCCaCCAAuuUCaACACG- -5'
11359 3' -49.9 NC_003084.1 + 65962 0.67 0.980109
Target:  5'- gUGCACCuuCCaGUGGUgggaaacgcuAGUggGUGCa -3'
miRNA:   3'- -ACGUGGu-GGcCACCAauu-------UCAa-CACG- -5'
11359 3' -49.9 NC_003084.1 + 65701 0.69 0.94636
Target:  5'- -uCACCACCGGUGccGUUGgcAAGUcccgGUGUg -3'
miRNA:   3'- acGUGGUGGCCAC--CAAU--UUCAa---CACG- -5'
11359 3' -49.9 NC_003084.1 + 64795 0.68 0.959198
Target:  5'- aGgGCCACCG-----UGAGGUUGUGCg -3'
miRNA:   3'- aCgUGGUGGCcaccaAUUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 62180 0.71 0.878509
Target:  5'- aGCAaCGgUGGUGGUggcggcGGUUGUGCa -3'
miRNA:   3'- aCGUgGUgGCCACCAauu---UCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 61278 0.68 0.969746
Target:  5'- gUGCACCGagCGGUGGcgugguGGUcGUGUa -3'
miRNA:   3'- -ACGUGGUg-GCCACCaauu--UCAaCACG- -5'
11359 3' -49.9 NC_003084.1 + 60054 0.73 0.781034
Target:  5'- cGCACCaccugagcucACCGGUGGUgguGAGUaUG-GCa -3'
miRNA:   3'- aCGUGG----------UGGCCACCAau-UUCA-ACaCG- -5'
11359 3' -49.9 NC_003084.1 + 59920 0.71 0.862753
Target:  5'- -cCACCACCGGUGaGcucAGGUgGUGCg -3'
miRNA:   3'- acGUGGUGGCCAC-CaauUUCAaCACG- -5'
11359 3' -49.9 NC_003084.1 + 58244 0.66 0.989684
Target:  5'- cUGCACCACga--GGUUGAAGggaagaGUGCu -3'
miRNA:   3'- -ACGUGGUGgccaCCAAUUUCaa----CACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.