miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11367 5' -54.1 NC_003084.1 + 81824 0.66 0.920917
Target:  5'- uCGGCGCUGCAcauUGCccagaaAGgCGAgUGAAGCg -3'
miRNA:   3'- -GCCGCGAUGUu--GCG------UCgGCU-GCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 39930 0.66 0.920917
Target:  5'- gGGUGUggaaaauuuUAGCGCAaUCGGCGAAACa -3'
miRNA:   3'- gCCGCGau-------GUUGCGUcGGCUGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 97633 0.66 0.920917
Target:  5'- -cGCGgUGCGAUGUGGaCCGuaGCGAGGCu -3'
miRNA:   3'- gcCGCgAUGUUGCGUC-GGC--UGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 69480 0.66 0.920917
Target:  5'- gGGCguGCUACGAcCGCAGCUcaucUGGGACa -3'
miRNA:   3'- gCCG--CGAUGUU-GCGUCGGcu--GCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 71658 0.66 0.915004
Target:  5'- uCGGCGCUGCcuGAUGCcGUuuCGGCaGAACg -3'
miRNA:   3'- -GCCGCGAUG--UUGCGuCG--GCUGcUUUG- -5'
11367 5' -54.1 NC_003084.1 + 55535 0.66 0.915004
Target:  5'- cCGGCuGCUGCuGCuGCuGCCGAUucAACc -3'
miRNA:   3'- -GCCG-CGAUGuUG-CGuCGGCUGcuUUG- -5'
11367 5' -54.1 NC_003084.1 + 47186 0.66 0.914399
Target:  5'- cCGGC-------CGCAGCCGugGGAACu -3'
miRNA:   3'- -GCCGcgauguuGCGUCGGCugCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 10388 0.66 0.908836
Target:  5'- gGGUGCUugGA-GCAGCUGAauauGGCa -3'
miRNA:   3'- gCCGCGAugUUgCGUCGGCUgcu-UUG- -5'
11367 5' -54.1 NC_003084.1 + 80910 0.66 0.908836
Target:  5'- uGaGCGC-ACGGuucUGCAGCCGGCGu-ACa -3'
miRNA:   3'- gC-CGCGaUGUU---GCGUCGGCUGCuuUG- -5'
11367 5' -54.1 NC_003084.1 + 105497 0.66 0.908836
Target:  5'- aGGCcgagcgugaGCUGgAGCGCAgGUCGAUGGAGg -3'
miRNA:   3'- gCCG---------CGAUgUUGCGU-CGGCUGCUUUg -5'
11367 5' -54.1 NC_003084.1 + 97803 0.66 0.908836
Target:  5'- uCGGC-CaACGGCucCAGCCGACGcAACa -3'
miRNA:   3'- -GCCGcGaUGUUGc-GUCGGCUGCuUUG- -5'
11367 5' -54.1 NC_003084.1 + 71619 0.66 0.902414
Target:  5'- gGGuUGCUACAACGaAGUCGuACGguACg -3'
miRNA:   3'- gCC-GCGAUGUUGCgUCGGC-UGCuuUG- -5'
11367 5' -54.1 NC_003084.1 + 89791 0.67 0.888822
Target:  5'- uGGUGCUucCAACGguGCCGG-GAcuGCa -3'
miRNA:   3'- gCCGCGAu-GUUGCguCGGCUgCUu-UG- -5'
11367 5' -54.1 NC_003084.1 + 9348 0.67 0.888822
Target:  5'- cCGGUGCgcccagcucgGCAGCGacaAGuuGAUGAAAUu -3'
miRNA:   3'- -GCCGCGa---------UGUUGCg--UCggCUGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 64008 0.67 0.886699
Target:  5'- aGGCGCUcaacgcuaagcgacACAucuACGguGCCGcggGCGAGGa -3'
miRNA:   3'- gCCGCGA--------------UGU---UGCguCGGC---UGCUUUg -5'
11367 5' -54.1 NC_003084.1 + 29664 0.67 0.88166
Target:  5'- aCGaGCGCaGCccgaacCGCAGCCacugucGACGAAGCu -3'
miRNA:   3'- -GC-CGCGaUGuu----GCGUCGG------CUGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 1115 0.67 0.88166
Target:  5'- cCGGuCGUUACGACGU-GCgCGAugUGAAACg -3'
miRNA:   3'- -GCC-GCGAUGUUGCGuCG-GCU--GCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 39152 0.67 0.88166
Target:  5'- uGGUGUUgugGCAaucuACGUgcugagAGCCGGCGAAAUg -3'
miRNA:   3'- gCCGCGA---UGU----UGCG------UCGGCUGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 55446 0.67 0.88166
Target:  5'- uGGgGCUGCG--GCGGCUGGCucAACg -3'
miRNA:   3'- gCCgCGAUGUugCGUCGGCUGcuUUG- -5'
11367 5' -54.1 NC_003084.1 + 94702 0.67 0.869708
Target:  5'- uGGCGCacauuggcgaaccuuUGCGGC-CGGCCGcCGAGAg -3'
miRNA:   3'- gCCGCG---------------AUGUUGcGUCGGCuGCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.